C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DDB1 and CUL4 associated factor 13
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000612750 DCAF13-008 ENSG00000164934 9606 + 8:103415389-103443453 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000612750
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000612750 5.922±0.00 4.072±0.00 5.350±2.64 5.700±1.37 2.320±0.00 6.045±1.10 3.225±0.59 3.639±0.00 1.831±0.37 25.314±20.50 6.888±1.01 18.940±5.47

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004T6 CIL_0004T6_0002 CGP 8:103371515-103415189
CIL_00060C CIL_00060C_0001 CGP 8:103398635-103443453
CIL_00060F CIL_00060F_0001 CGP 8:103414714-104256094

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0006364 IEA rRNA processing
GO:0016567 IEA protein ubiquitination
GO:0030529 IEA ribonucleoprotein complex
GO:0044822 IDA poly(A) RNA binding
GO:0080008 IDA Cul4-RING E3 ubiquitin ligase complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000022909 Dcaf13-001 protein_coding Mus_musculus 0 1749
ENSMUST00000119448 Gm14667-001 processed_pseudogene Mus_musculus 0 525

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