C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Alstrom syndrome 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000613296 ALMS1-001 ENSG00000116127 9606 + 2:73385758-73609919 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartLungMuscleOvaryPlacentaTestisENST00000613296
Transcript ID Adrenal Brain Breast Colon Heart Lung Muscle Ovary Placenta Testis
ENST00000613296 0.502±0.00 0.180±0.00 0.134±0.00 0.878±0.00 0.120±0.00 0.333±0.00 0.206±0.00 0.660±0.28 0.180±0.01 1.624±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003EB CIL_0003EB_0001 CGP 2:73290929-73610793
CIL_0000LA CIL_0000LA_0001 CGP 2:73385758-73642393

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000086 TAS G2/M transition of mitotic cell cycle
GO:0000278 TAS mitotic cell cycle
GO:0003674 ND molecular_function
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005813 IDA centrosome
GO:0005814 IDA centriole
GO:0005829 TAS cytosol
GO:0005929 IEA cilium
GO:0016197 IMP endosomal transport
GO:0051492 IMP regulation of stress fiber assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000072018 Alms1-001 protein_coding Mus_musculus 0 2350

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