C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vascular endothelial growth factor A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000615393 VEGFA-202 ENSG00000112715 9606 + 6:43770209-43786484 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBreastColonKidneyLiverMuscleOvaryPlacentaTestisENST00000615393
Transcript ID Adrenal Bladder Breast Colon Kidney Liver Muscle Ovary Placenta Testis
ENST00000615393 3.289±0.00 5.275±0.00 5.621±0.00 4.102±2.06 1.692±0.00 7.920±0.00 8.047±0.00 14.750±15.11 6.381±1.82 1.336±0.67

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YI CIL_0008YI_0001 VISTA 6:43493027-44094540

Gene Ontology

GO IDEvidence TypeGO Description
GO:0008083 IEA growth factor activity
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000167860 Vegfa-201 protein_coding Mus_musculus 0 2948
ENSMUST00000024747 Vegfa-008 protein_coding Mus_musculus 0 2527
ENSMUST00000071648 Vegfa-001 protein_coding Mus_musculus 0 1530
ENSMUST00000142351 Vegfa-003 protein_coding Mus_musculus 0 1421
ENSMUST00000150327 Vegfa-007 retained_intron Mus_musculus 0 562
ENSMUST00000113519 Vegfa-009 protein_coding Mus_musculus 0 490
ENSMUST00000113520 Vegfa-010 protein_coding Mus_musculus 0 490
ENSMUST00000146149 Vegfa-002 retained_intron Mus_musculus 0 340
ENSMUST00000133605 Vegfa-004 retained_intron Mus_musculus 0 287
ENSMUST00000142321 Vegfa-005 retained_intron Mus_musculus 2e-35 156
ENSMUST00000143985 Vegfa-006 retained_intron Mus_musculus 1e-32 147

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