C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phosphoglucomutase 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000616566 PGM3-201 ENSG00000013375 9606 - 6:83164873-83193293 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderKidneyMuscleENST00000616566
Transcript ID Bladder Kidney Muscle
ENST00000616566 1.326±0.00 1.115±0.00 0.287±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000673 CIL_000673_0001 CGP 6:82892398-83171350
CIL_000672 CIL_000672_0001 CGP 6:83067666-83193936
CIL_000671 CIL_000671_0001 CGP 6:83161150-83198932

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005975 IEA carbohydrate metabolic process
GO:0016868 IEA intramolecular transferase activity, phosphotransferases

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000070064 Pgm3-001 protein_coding Mus_musculus 0 1472
ENSMUST00000186193 Pgm3-004 retained_intron Mus_musculus 0 1384
ENSMUST00000187251 Pgm3-002 retained_intron Mus_musculus 0 1184
ENSMUST00000072585 Pgm3-003 protein_coding Mus_musculus 0 1044
ENSMUST00000034987 Dopey1-201 protein_coding Mus_musculus 0 475
ENSMUST00000187427 Dopey1-018 retained_intron Mus_musculus 0 475
ENSMUST00000189817 Dopey1-013 nonsense_mediated_decay Mus_musculus 0 475
ENSMUST00000185919 Dopey1-005 nonsense_mediated_decay Mus_musculus 0 475
ENSMUST00000190957 Dopey1-004 protein_coding Mus_musculus 0 475
ENSMUST00000189564 Dopey1-014 retained_intron Mus_musculus 0 470
ENSMUST00000183046 Smchd1-006 retained_intron Mus_musculus 0.000000000002 81

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