C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DDB1 and CUL4 associated factor 13
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000616836 DCAF13-201 ENSG00000164934 9606 + 8:103414714-103443450 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungPlacentaTestisENST00000616836
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Placenta Testis
ENST00000616836 5.710±0.00 6.792±0.00 4.086±0.00 4.347±0.00 4.476±0.00 3.948±0.00 4.344±0.00 2.412±0.12 3.460±0.00 2.665±0.00 6.744±0.36

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004T6 CIL_0004T6_0002 CGP 8:103371515-103415189
CIL_00060C CIL_00060C_0001 CGP 8:103398635-103443453
CIL_00060F CIL_00060F_0001 CGP 8:103414714-104256094

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0006364 IEA rRNA processing
GO:0016567 IEA protein ubiquitination
GO:0030529 IEA ribonucleoprotein complex
GO:0044822 IDA poly(A) RNA binding
GO:0080008 IDA Cul4-RING E3 ubiquitin ligase complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000022909 Dcaf13-001 protein_coding Mus_musculus 0 1749
ENSMUST00000119448 Gm14667-001 processed_pseudogene Mus_musculus 0 525
ENSMUST00000022908 Slc25a32-201 protein_coding Mus_musculus 0 281

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