C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 6 (neurotransmitter transporter), member 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000618278 SLC6A6-006 ENSG00000131389 9606 + 3:14402576-14489349 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonKidneyLiverOvaryTestisENST00000618278
Transcript ID Adrenal Brain Colon Kidney Liver Ovary Testis
ENST00000618278 5.644±0.00 1.578±0.00 0.324±0.00 1.371±1.26 0.413±0.00 6.314±2.95 1.196±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007GZ CIL_0007GZ_0001 CGP 3:14178358-14489349
CIL_000514 CIL_000514_0001 CGP 3:14402576-14542081

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005328 IEA neurotransmitter:sodium symporter activity
GO:0006836 IEA neurotransmitter transport
GO:0016021 IEA integral component of membrane
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000032185 Slc6a6-201 protein_coding Mus_musculus 0 1406
ENSMUST00000142021 Slc6a13-003 processed_transcript Mus_musculus 0 243
ENSMUST00000064580 Slc6a13-001 protein_coding Mus_musculus 0 243

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