C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: CCR4-NOT transcription complex, subunit 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000618939 CNOT3-002 ENSG00000088038 9606 + 19:54137787-54155680 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; LungENST00000618939
Transcript ID Lung
ENST00000618939 0.268±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005OD CIL_0005OD_0001 CGP 19:54115410-54155681
CIL_0001U4 CIL_0001U4_0001 CGP 19:54137728-54159882

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000038913 Cnot3-002 protein_coding Mus_musculus 0 2447
ENSMUST00000135977 Cnot3-003 nonsense_mediated_decay Mus_musculus 0 1940
ENSMUST00000143085 Cnot3-001 retained_intron Mus_musculus 0 1321
ENSMUST00000132344 Cnot3-006 protein_coding Mus_musculus 0 1221
ENSMUST00000129973 Cnot3-005 retained_intron Mus_musculus 0 658
ENSMUST00000144097 Cnot3-004 retained_intron Mus_musculus 0 595
ENSMUST00000019878 Leng1-001 protein_coding Mus_musculus 0 595
ENSMUST00000160200 Cnot3-007 protein_coding Mus_musculus 0 588
ENSDART00000136697 cnot3b-001 protein_coding Danio_rerio 0 326
ENSDART00000081485 cnot3b-202 protein_coding Danio_rerio 0 318
ENSDART00000137699 cnot3a-001 protein_coding Danio_rerio 0 272
ENSDART00000102100 cnot3a-201 protein_coding Danio_rerio 0 250

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