C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sorting nexin 10
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000619420 SNX10-202 ENSG00000086300 9606 + 7:26360454-26374327 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000619420
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000619420 1.374±0.00 2.531±0.00 9.752±3.98 4.123±0.00 0.500±0.00 0.220±0.07 8.148±0.00 0.249±0.00 0.164±0.00 0.634±0.38 0.814±0.00 2.992±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008Q3 CIL_0008Q3_0001 VISTA 7:25714231-26318034
CIL_000874 CIL_000874_0001 VISTA 7:25760923-26361842
CIL_0009DE CIL_0009DE_0001 VISTA 7:26185042-26786016
CIL_0007OD CIL_0007OD_0001 UCNEbase 7:26191819-26506343
CIL_0002CN CIL_0002CN_0001 CGP 7:26201162-26374329

Gene Ontology

GO IDEvidence TypeGO Description
GO:0035091 IEA phosphatidylinositol binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000179365 Snx10-201 protein_coding Mus_musculus 0 824
ENSMUST00000049152 Snx10-001 protein_coding Mus_musculus 0 824
ENSMUST00000114439 Snx10-004 protein_coding Mus_musculus 0 734
ENSMUST00000137212 Snx10-006 protein_coding Mus_musculus 0 603
ENSMUST00000116606 Gm14806-001 processed_pseudogene Mus_musculus 0 507
ENSMUST00000137642 Gm15534-001 processed_pseudogene Mus_musculus 0 499
ENSMUST00000149024 Snx10-003 nonsense_mediated_decay Mus_musculus 0 492
ENSMUST00000140560 Snx10-005 protein_coding Mus_musculus 0 327

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