C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phospholipase C, delta 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000619929 PLCD3-001 ENSG00000161714 9606 - 17:45108967-45132498 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonLiverMuscleOvaryPlacentaTestisENST00000619929
Transcript ID Brain Breast Colon Liver Muscle Ovary Placenta Testis
ENST00000619929 7.755±5.52 7.653±0.00 5.386±3.14 1.717±0.00 7.108±3.98 27.600±0.00 11.447±3.67 6.102±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006U9 CIL_0006U9_0001 CGP 17:45023340-45109016
CIL_0004D8 CIL_0004D8_0002 CGP 17:45051610-45133354
CIL_00039B CIL_00039B_0001 CGP 17:45108967-45144181

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001525 IEA angiogenesis
GO:0004435 IEA phosphatidylinositol phospholipase C activity
GO:0004871 IEA signal transducer activity
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding
GO:0005829 IEA cytosol
GO:0005886 TAS plasma membrane
GO:0006629 IEA lipid metabolic process
GO:0007165 IEA signal transduction
GO:0008081 IEA phosphoric diester hydrolase activity
GO:0008152 IEA metabolic process
GO:0016020 IEA membrane
GO:0016042 IEA lipid catabolic process
GO:0035556 IEA intracellular signal transduction
GO:0042127 IEA regulation of cell proliferation
GO:0043647 TAS inositol phosphate metabolic process
GO:0044281 TAS small molecule metabolic process
GO:0060716 IEA labyrinthine layer blood vessel development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000103077 Plcd3-001 protein_coding Mus_musculus 0 2501
ENSMUST00000128650 Plcd3-002 protein_coding Mus_musculus 0 1338
ENSDART00000046098 plcd1b-201 protein_coding Danio_rerio 3e-40 172
ENSMUST00000143012 Plcd3-004 processed_transcript Mus_musculus 1e-38 167
ENSMUST00000162168 Zkscan5-004 nonsense_mediated_decay Mus_musculus 0.0004 53

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