C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: proteasome (prosome, macropain) 26S subunit, non-ATPase, 13
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000621534 PSMD13-201 ENSG00000185627 9606 + 11:236996-252984 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000621534
Transcript ID Adipose Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000621534 12.669±0.00 3.035±0.00 15.382±0.00 9.034±0.00 7.795±6.52 9.534±7.90 32.995±0.00 13.781±0.00 20.496±9.48 14.118±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006LA CIL_0006LA_0001 CGP 11:207511-236931
CIL_0006QN CIL_0006QN_0001 CGP 11:215458-252984

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000026560 Psmd13-001 protein_coding Mus_musculus 0 1424
ENSMUST00000151644 Psmd13-002 retained_intron Mus_musculus 0 1194
ENSMUST00000166889 Psmd13-010 nonsense_mediated_decay Mus_musculus 0 1149
ENSMUST00000163610 Psmd13-011 protein_coding Mus_musculus 0 1075
ENSMUST00000129683 Psmd13-005 processed_transcript Mus_musculus 0 765
ENSMUST00000164681 Psmd13-013 protein_coding Mus_musculus 0 761
ENSMUST00000130462 Psmd13-009 protein_coding Mus_musculus 0 682
ENSMUST00000140411 Psmd13-003 processed_transcript Mus_musculus 0 516
ENSMUST00000124736 Psmd13-004 processed_transcript Mus_musculus 0 422
ENSMUST00000125668 Psmd13-008 retained_intron Mus_musculus 0 326
ENSMUST00000146875 Psmd13-006 retained_intron Mus_musculus 0 278
ENSMUST00000165539 Psmd13-012 protein_coding Mus_musculus 0 226
ENSMUST00000153385 Psmd13-007 processed_transcript Mus_musculus 3.9937e-43 180

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