C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: coiled-coil domain containing 88A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000621814 CCDC88A-203 ENSG00000115355 9606 - 2:55334264-55419613 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENST00000621814
Transcript ID Bladder Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000621814 1.503±0.00 3.227±0.00 2.625±0.00 2.462±0.00 3.559±0.00 2.931±0.00 0.490±0.00 6.164±0.00 10.234±0.00 57.256±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000Z6 CIL_0000Z6_0002 CGP 2:55236595-55419921

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0016020 IEA membrane
GO:0016192 IEA vesicle-mediated transport
GO:0016477 IEA cell migration
GO:0032956 IEA regulation of actin cytoskeleton organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000040182 Ccdc88a-001 protein_coding Mus_musculus 0 3369
ENSMUST00000109477 Ccdc88a-007 protein_coding Mus_musculus 0 562
ENSMUST00000137227 Ccdc88a-005 processed_transcript Mus_musculus 0 311

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