C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ArfGAP with GTPase domain, ankyrin repeat and PH domain 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000622464 AGAP3-201 ENSG00000133612 9606 + 7:151086742-151144436 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastColonKidneyLiverOvaryPlacentaTestisENST00000622464
Transcript ID Adipose Bladder Breast Colon Kidney Liver Ovary Placenta Testis
ENST00000622464 11.080±0.00 0.648±0.00 3.920±1.19 2.318±0.00 2.021±0.00 1.966±0.00 15.278±11.08 8.147±1.61 2.251±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008T1 CIL_0008T1_0001 VISTA 7:150668461-151272977
CIL_0003TG CIL_0003TG_0001 CGP 7:151081080-151144436
CIL_0004EO CIL_0004EO_0001 CGP 7:151085831-151174745

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0006184 IEA GTP catabolic process
GO:0007165 IEA signal transduction
GO:0007264 IEA small GTPase mediated signal transduction
GO:0008060 IEA ARF GTPase activator activity
GO:0008270 IEA zinc ion binding
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0032312 IEA regulation of ARF GTPase activity
GO:0043547 IEA positive regulation of GTPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000024123 Agap3-201 protein_coding Mus_musculus 0 3343
ENSDART00000128690 protein_coding Danio_rerio 0 804
ENSMUST00000190096 Agap1-002 protein_coding Mus_musculus 0 776
ENSMUST00000027521 Agap1-001 protein_coding Mus_musculus 0 776
ENSMUST00000185417 Agap1-004 retained_intron Mus_musculus 4e-36 158
ENSDART00000125104 agap2-202 protein_coding Danio_rerio 0.00006 55
ENSDART00000086813 agap2-201 protein_coding Danio_rerio 0.00006 55

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