C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DEAD (Asp-Glu-Ala-Asp) box helicase 3, Y-linked
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000623700 DDX3Y-201 ENSG00000280001 9606 + Y:12904937-12918122 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainColonHeartLiverLungOvaryPlacentaTestisENST00000623700
Transcript ID Bladder Brain Colon Heart Liver Lung Ovary Placenta Testis
ENST00000623700 4.814±0.00 4.221±0.00 4.498±0.00 4.021±0.00 15.157±0.00 11.669±0.00 2.306±0.00 6.334±0.00 76.408±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00021T CIL_00021T_0002 CGP Y:12904937-13480673

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0003723 IEA RNA binding
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006200 IEA ATP catabolic process
GO:0008026 IEA ATP-dependent helicase activity
GO:0016020 IDA membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000091190 Ddx3y-001 protein_coding Mus_musculus 0 2355
ENSMUST00000188484 Ddx3y-002 nonsense_mediated_decay Mus_musculus 0 2311
ENSMUST00000000804 Ddx3x-001 protein_coding Mus_musculus 0 2128
ENSMUST00000149639 Ddx3x-005 retained_intron Mus_musculus 0 732
ENSMUST00000189614 RP23-12H12.1-001 processed_pseudogene Mus_musculus 0 682
ENSMUST00000188182 Ddx3y-003 retained_intron Mus_musculus 0 518
ENSMUST00000187596 Ddx3y-004 retained_intron Mus_musculus 3e-40 171

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