C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: actinin, alpha 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000007219 actn1 7955 - 13:36722687-36793101 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000100217 actn1-201 36722691-36793090 protein_coding
  ENSDART00000123678 actn1-202 36722691-36793090 protein_coding
  ENSDART00000133740 actn1-002 36722690-36793090 nonsense_mediated_decay
  ENSDART00000133858 actn1-003 36723030-36732498 nonsense_mediated_decay
  ENSDART00000135741 actn1-004 36722963-36724203 retained_intron
  ENSDART00000140243 actn1-001 36722687-36793101 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000100217ENSDART00000123678ENSDART00000133740ENSDART00000133858ENSDART00000140243
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000100217 N/A 6.376±0.00 24.222±0.00 N/A N/A
ENSDART00000123678 2.832±0.00 6.471±0.51 2.544±0.00 N/A 2.146±0.00
ENSDART00000133740 N/A 2.940±0.00 12.321±0.00 N/A N/A
ENSDART00000133858 N/A N/A N/A N/A 4.651±0.00
ENSDART00000140243 6.491±1.90 2.888±0.27 3.435±0.00 1.243±0.00 5.897±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001JZ CIL_0001JZ_0001 CGP 13:36722687-36840775

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000072110 ACTN1 actinin, alpha 1 protein_coding Homo_sapiens
ENSMUSG00000015143 Actn1 actinin, alpha 1 protein_coding Mus_musculus

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