C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actinin, alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000133858 actn1-003 ENSDARG00000007219 7955 - 13:36723030-36732498 nonsense_mediated_decay

Danio rerio EnsemblZv9

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; MuscleENSDART00000133858
Transcript ID Muscle
ENSDART00000133858 4.651±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001JZ CIL_0001JZ_0001 CGP 13:36722687-36840775

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000193403 ACTN1-001 protein_coding Homo_sapiens 0 453
ENST00000376839 ACTN1-007 protein_coding Homo_sapiens 0 562
ENST00000394419 ACTN1-005 protein_coding Homo_sapiens 0 302
ENST00000438964 ACTN1-002 protein_coding Homo_sapiens 0 562
ENST00000538545 ACTN1-006 protein_coding Homo_sapiens 0 466
ENST00000544964 ACTN1-019 protein_coding Homo_sapiens 0 265
ENST00000553290 ACTN1-020 protein_coding Homo_sapiens 0 265
ENST00000553882 ACTN1-009 retained_intron Homo_sapiens 0 248
ENST00000555075 ACTN1-022 protein_coding Homo_sapiens 0 265
ENST00000556083 ACTN1-008 retained_intron Homo_sapiens 0 453
ENST00000556432 ACTN1-023 retained_intron Homo_sapiens 0 265

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