C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actinin, alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000140243 actn1-001 ENSDARG00000007219 7955 - 13:36722687-36793101 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000140243
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000140243 6.491±1.90 2.888±0.27 3.435±0.00 1.243±0.00 5.897±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001JZ CIL_0001JZ_0001 CGP 13:36722687-36840775

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021554 Actn1-201 protein_coding Mus_musculus 0 2049
ENSMUST00000068045 Actn4-001 protein_coding Mus_musculus 0 1581
ENSMUST00000127210 Actn4-005 protein_coding Mus_musculus 0 966
ENSMUST00000144909 Actn4-002 processed_transcript Mus_musculus 0 1098
ENSMUST00000150493 Actn4-006 processed_transcript Mus_musculus 0 416
ENSMUST00000167327 Actn1-202 protein_coding Mus_musculus 0 1938
ENST00000193403 ACTN1-001 protein_coding Homo_sapiens 0 2230
ENST00000252699 ACTN4-001 protein_coding Homo_sapiens 0 1698
ENST00000366578 ACTN2-001 protein_coding Homo_sapiens 0 1249
ENST00000376839 ACTN1-007 protein_coding Homo_sapiens 0 2015
ENST00000390009 ACTN4-010 protein_coding Homo_sapiens 0 1181
ENST00000394419 ACTN1-005 protein_coding Homo_sapiens 0 1984
ENST00000424234 ACTN4-201 protein_coding Homo_sapiens 0 695
ENST00000438964 ACTN1-002 protein_coding Homo_sapiens 0 2098
ENST00000440400 ACTN4-004 protein_coding Homo_sapiens 0 510
ENST00000473049 ACTN4P2-001 processed_pseudogene Homo_sapiens 0.0000000000006 81
ENST00000492634 ACTN2-004 processed_transcript Homo_sapiens 0 457
ENST00000494762 ACTN2-003 processed_transcript Homo_sapiens 0 268
ENST00000502692 ACTN3-003 protein_coding Homo_sapiens 0 1081
ENST00000511191 ACTN3-005 nonsense_mediated_decay Homo_sapiens 0 257
ENST00000513398 ACTN3-001 protein_coding Homo_sapiens 0 1134
ENST00000514175 ACTN4P1-001 processed_pseudogene Homo_sapiens 0 536
ENST00000538545 ACTN1-006 protein_coding Homo_sapiens 0 2002
ENST00000542672 ACTN2-201 protein_coding Homo_sapiens 0 1238
ENST00000544964 ACTN1-019 protein_coding Homo_sapiens 0 311
ENST00000546208 ACTN2-202 protein_coding Homo_sapiens 0 846
ENST00000553290 ACTN1-020 protein_coding Homo_sapiens 0 457
ENST00000553882 ACTN1-009 retained_intron Homo_sapiens 0 252
ENST00000555075 ACTN1-022 protein_coding Homo_sapiens 0 420
ENST00000556083 ACTN1-008 retained_intron Homo_sapiens 0 1160
ENST00000556432 ACTN1-023 retained_intron Homo_sapiens 0 335

Loading