C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actinin, alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000123678 actn1-202 ENSDARG00000007219 7955 - 13:36722691-36793090 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyMuscleENSDART00000123678
Transcript ID Brain Heart Kidney Muscle
ENSDART00000123678 2.832±0.00 6.471±0.51 2.544±0.00 2.146±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001JZ CIL_0001JZ_0001 CGP 13:36722687-36840775

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021554 Actn1-201 protein_coding Mus_musculus 0 1953
ENSMUST00000068045 Actn4-001 protein_coding Mus_musculus 0 1500
ENSMUST00000127210 Actn4-005 protein_coding Mus_musculus 0 966
ENSMUST00000144909 Actn4-002 processed_transcript Mus_musculus 0 1016
ENSMUST00000150493 Actn4-006 processed_transcript Mus_musculus 0 416
ENSMUST00000167327 Actn1-202 protein_coding Mus_musculus 0 2047
ENST00000193403 ACTN1-001 protein_coding Homo_sapiens 0 2115
ENST00000252699 ACTN4-001 protein_coding Homo_sapiens 0 1589
ENST00000366578 ACTN2-001 protein_coding Homo_sapiens 0 1352
ENST00000376839 ACTN1-007 protein_coding Homo_sapiens 0 2141
ENST00000390009 ACTN4-010 protein_coding Homo_sapiens 0 1072
ENST00000394419 ACTN1-005 protein_coding Homo_sapiens 0 1932
ENST00000424234 ACTN4-201 protein_coding Homo_sapiens 0 586
ENST00000438964 ACTN1-002 protein_coding Homo_sapiens 0 2224
ENST00000440400 ACTN4-004 protein_coding Homo_sapiens 0 586
ENST00000473049 ACTN4P2-001 processed_pseudogene Homo_sapiens 0.000000001 69
ENST00000492634 ACTN2-004 processed_transcript Homo_sapiens 0 457
ENST00000494762 ACTN2-003 processed_transcript Homo_sapiens 0 268
ENST00000502692 ACTN3-003 protein_coding Homo_sapiens 0 1195
ENST00000511191 ACTN3-005 nonsense_mediated_decay Homo_sapiens 0 257
ENST00000513398 ACTN3-001 protein_coding Homo_sapiens 0 1249
ENST00000514175 ACTN4P1-001 processed_pseudogene Homo_sapiens 0 446
ENST00000538545 ACTN1-006 protein_coding Homo_sapiens 0 2128
ENST00000542672 ACTN2-201 protein_coding Homo_sapiens 0 1341
ENST00000544964 ACTN1-019 protein_coding Homo_sapiens 0 294
ENST00000546208 ACTN2-202 protein_coding Homo_sapiens 0 950
ENST00000553290 ACTN1-020 protein_coding Homo_sapiens 0 440
ENST00000553882 ACTN1-009 retained_intron Homo_sapiens 0 248
ENST00000555075 ACTN1-022 protein_coding Homo_sapiens 0 420
ENST00000556083 ACTN1-008 retained_intron Homo_sapiens 0 1046
ENST00000556432 ACTN1-023 retained_intron Homo_sapiens 0 335

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