C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: si:ch73-211l2.3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000075932 si:ch73-211l2.3 7955 - 8:47078720-47080882 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000006898 si:ch73-211l2.3-001 47078720-47080882 protein_coding
  ENSDART00000145799 si:ch73-211l2.3-002 47079532-47080853 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyMuscleENSDART00000006898ENSDART00000145799
Transcript ID Brain Heart Kidney Muscle
ENSDART00000006898 0.112±0.00 0.268±0.08 0.410±0.33 N/A
ENSDART00000145799 N/A N/A N/A 0.167±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002504 IEA antigen processing and presentation of peptide or polysaccharide antigen via MHC class II
GO:0005515 IEA protein binding
GO:0006955 IEA immune response
GO:0016020 IEA membrane
GO:0016021 IEA integral to membrane
GO:0019882 IEA antigen processing and presentation
GO:0042613 IEA MHC class II protein complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000196735 HLA-DQA1 major histocompatibility complex, class II, DQ alpha 1 protein_coding Homo_sapiens
ENSG00000204252 HLA-DOA major histocompatibility complex, class II, DO alpha protein_coding Homo_sapiens
ENSG00000204287 HLA-DRA major histocompatibility complex, class II, DR alpha protein_coding Homo_sapiens
ENSG00000231389 HLA-DPA1 major histocompatibility complex, class II, DP alpha 1 protein_coding Homo_sapiens
ENSG00000237541 HLA-DQA2 major histocompatibility complex, class II, DQ alpha 2 protein_coding Homo_sapiens
ENSMUSG00000024334 H2-Oa histocompatibility 2, O region alpha locus protein_coding Mus_musculus
ENSMUSG00000036594 H2-Aa histocompatibility 2, class II antigen A, alpha protein_coding Mus_musculus

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