C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: plexin D1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000004399 PLXND1 9606 - 3:129555175-129606818 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000324093 PLXND1-001 129555175-129606818 protein_coding
  ENST00000501038 PLXND1-003 129555214-129557034 retained_intron
  ENST00000503166 PLXND1-013 129563094-129566166 retained_intron
  ENST00000504524 PLXND1-002 129555214-129558697 retained_intron
  ENST00000504689 PLXND1-018 129555214-129557223 protein_coding
  ENST00000504767 PLXND1-011 129570684-129571723 retained_intron
  ENST00000504979 PLXND1-015 129562473-129563213 retained_intron
  ENST00000505237 PLXND1-006 129585952-129589527 protein_coding
  ENST00000505505 PLXND1-008 129574336-129578548 retained_intron
  ENST00000505665 PLXND1-007 129583631-129586685 nonsense_mediated_decay
  ENST00000506979 PLXND1-014 129556617-129561056 protein_coding
  ENST00000508630 PLXND1-016 129558536-129560942 retained_intron
  ENST00000511018 PLXND1-010 129570872-129571858 retained_intron
  ENST00000512744 PLXND1-005 129555218-129565991 nonsense_mediated_decay
  ENST00000512807 PLXND1-017 129559165-129560414 retained_intron
  ENST00000514990 PLXND1-012 129569189-129571204 retained_intron
  ENST00000515191 PLXND1-009 129571540-129572982 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000324093ENST00000504524ENST00000506979ENST00000508630ENST00000512744ENST00000514990
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000324093 29.703±0.00 22.226±0.00 0.725±0.00 3.187±2.25 17.556±14.47 3.779±2.69 4.618±3.47 5.287±2.60 3.138±1.60 10.881±7.53 N/A 6.107±4.65 44.572±11.63 5.810±2.41
ENST00000504524 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.858±0.00 12.657±1.36 54.648±0.00 8.327±0.00
ENST00000506979 N/A N/A N/A 6.345±0.00 10.732±0.00 5.446±0.00 2.744±0.00 10.376±0.00 6.928±0.00 12.044±0.00 3.777±0.00 7.412±0.00 N/A N/A
ENST00000508630 N/A N/A 6.253±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512744 N/A N/A N/A N/A 1.560±0.00 N/A N/A 6.170±0.00 4.775±0.00 10.217±0.00 1.027±0.00 7.149±0.00 N/A N/A
ENST00000514990 N/A N/A N/A N/A 4.320±0.00 1.156±0.00 1.807±0.00 N/A N/A 5.303±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000314 CIL_000314_0001 CGP 3:129543214-129606818
CIL_000315 CIL_000315_0001 CGP 3:129555175-129893576

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001525 ISS angiogenesis
GO:0001569 IEA patterning of blood vessels
GO:0003151 IEA outflow tract morphogenesis
GO:0004872 IEA receptor activity
GO:0005515 IPI:IEA protein binding
GO:0005622 IEA intracellular
GO:0005886 TAS plasma membrane
GO:0005887 ISS integral component of plasma membrane
GO:0007165 IEA signal transduction
GO:0007275 IEA multicellular organismal development
GO:0007411 TAS axon guidance
GO:0007416 ISS synapse assembly
GO:0016020 IEA membrane
GO:0017154 ISS semaphorin receptor activity
GO:0019904 IPI protein domain specific binding
GO:0030027 IDA lamellipodium
GO:0030334 ISS regulation of cell migration
GO:0032092 IEA positive regulation of protein binding
GO:0043542 ISS endothelial cell migration
GO:0045765 ISS regulation of angiogenesis
GO:0060666 IEA dichotomous subdivision of terminal units involved in salivary gland branching
GO:0071526 ISS semaphorin-plexin signaling pathway

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000089935 PLXND1 (2 of 2) plexin D1 protein_coding Danio_rerio
ENSMUSG00000030123 Plxnd1 plexin D1 protein_coding Mus_musculus

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