C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: plexin D1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000324093 PLXND1-001 ENSG00000004399 9606 - 3:129555175-129606818 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000324093
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000324093 29.703±0.00 22.226±0.00 0.725±0.00 3.187±2.25 17.556±14.47 3.779±2.69 4.618±3.47 5.287±2.60 3.138±1.60 10.881±7.53 6.107±4.65 44.572±11.63 5.810±2.41

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000314 CIL_000314_0001 CGP 3:129543214-129606818
CIL_000315 CIL_000315_0001 CGP 3:129555175-129893576

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001525 ISS angiogenesis
GO:0001569 IEA patterning of blood vessels
GO:0003151 IEA outflow tract morphogenesis
GO:0004872 IEA receptor activity
GO:0005515 IPI:IEA protein binding
GO:0005622 IEA intracellular
GO:0005886 TAS plasma membrane
GO:0005887 ISS integral component of plasma membrane
GO:0007165 IEA signal transduction
GO:0007275 IEA multicellular organismal development
GO:0007411 TAS axon guidance
GO:0007416 ISS synapse assembly
GO:0016020 IEA membrane
GO:0017154 ISS semaphorin receptor activity
GO:0019904 IPI protein domain specific binding
GO:0030027 IDA lamellipodium
GO:0030334 ISS regulation of cell migration
GO:0032092 IEA positive regulation of protein binding
GO:0043542 ISS endothelial cell migration
GO:0045765 ISS regulation of angiogenesis
GO:0060666 IEA dichotomous subdivision of terminal units involved in salivary gland branching
GO:0071526 ISS semaphorin-plexin signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000015511 Plxnd1-001 protein_coding Mus_musculus 0 6708
ENSMUST00000131590 Plxnd1-002 protein_coding Mus_musculus 0 411
ENSDART00000123414 PLXND1 (2 of 2)-201 protein_coding Danio_rerio 0 305
ENSDART00000004222 plxnc1-201 protein_coding Danio_rerio 9.99995e-41 174
ENSDART00000135735 plxnc1-001 protein_coding Danio_rerio 9.99995e-41 174
ENSMUST00000060808 Plxnb2-201 protein_coding Mus_musculus 8e-22 111
ENSMUST00000109331 Plxnb2-001 protein_coding Mus_musculus 8e-22 111

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