C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: matrin 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000015479 MATR3 9606 + 5:139273752-139331677 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000361059 MATR3-201 139273752-139331677 protein_coding
  ENST00000394800 MATR3-001 139274104-139331671 protein_coding
  ENST00000394805 MATR3-002 139293648-139331359 protein_coding
  ENST00000448190 MATR3-020 139274102-139279839 processed_transcript
  ENST00000502394 MATR3-026 139276109-139307714 protein_coding
  ENST00000502422 MATR3-004 139315751-139329648 retained_intron
  ENST00000502499 MATR3-010 139293722-139330405 protein_coding
  ENST00000502929 MATR3-003 139274104-139330428 protein_coding
  ENST00000502944 MATR3-042 139321805-139322690 retained_intron
  ENST00000503340 MATR3-044 139294586-139307677 protein_coding
  ENST00000503811 MATR3-008 139293750-139330002 protein_coding
  ENST00000504023 MATR3-045 139294638-139307648 protein_coding
  ENST00000504045 MATR3-011 139293718-139317713 protein_coding
  ENST00000504203 MATR3-012 139274104-139329757 protein_coding
  ENST00000504311 MATR3-029 139293719-139318942 protein_coding
  ENST00000504643 MATR3-007 139293983-139322948 retained_intron
  ENST00000505016 MATR3-017 139274131-139307556 protein_coding
  ENST00000505522 MATR3-016 139274131-139283145 processed_transcript
  ENST00000505625 MATR3-005 139310043-139330437 retained_intron
  ENST00000506147 MATR3-018 139273789-139316148 protein_coding
  ENST00000506188 MATR3-021 139274103-139282989 processed_transcript
  ENST00000507197 MATR3-027 139274118-139283244 processed_transcript
  ENST00000507692 MATR3-022 139274103-139279388 retained_intron
  ENST00000507860 MATR3-030 139293742-139315214 retained_intron
  ENST00000508689 MATR3-032 139293952-139307650 protein_coding
  ENST00000508735 MATR3-014 139274131-139279129 processed_transcript
  ENST00000509644 MATR3-025 139274124-139317670 protein_coding
  ENST00000509918 MATR3-039 139293743-139321994 processed_transcript
  ENST00000509990 MATR3-013 139273752-139329404 protein_coding
  ENST00000510056 MATR3-009 139293730-139329760 protein_coding
  ENST00000511249 MATR3-034 139293737-139319470 protein_coding
  ENST00000511333 MATR3-040 139315347-139317105 retained_intron
  ENST00000511378 MATR3-046 139293778-139307442 protein_coding
  ENST00000511978 MATR3-037 139293750-139322029 processed_transcript
  ENST00000512040 MATR3-041 139322746-139326255 nonsense_mediated_decay
  ENST00000512107 MATR3-019 139273838-139316093 protein_coding
  ENST00000512876 MATR3-028 139293674-139318987 protein_coding
  ENST00000513121 MATR3-031 139293716-139315157 retained_intron
  ENST00000513259 MATR3-023 139274104-139280059 processed_transcript
  ENST00000513678 MATR3-035 139293680-139317685 protein_coding
  ENST00000514110 MATR3-015 139274131-139279586 retained_intron
  ENST00000514402 MATR3-038 139308243-139315145 retained_intron
  ENST00000514488 MATR3-043 139294530-139307715 protein_coding
  ENST00000514528 MATR3-033 139293965-139317721 protein_coding
  ENST00000514694 MATR3-024 139274104-139307737 protein_coding
  ENST00000515833 MATR3-036 139308095-139322017 protein_coding
  ENST00000618441 MATR3-202 139293750-139331677 protein_coding
  ENST00000620916 MATR3-203 139307416-139331677 protein_coding

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000394805ENST00000502499ENST00000504045ENST00000505625ENST00000509990ENST00000510056ENST00000512040
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000394805 N/A N/A N/A 24.207±0.00 11.178±0.00 8.705±0.00 2.934±0.00 8.413±0.00 11.389±0.00 11.850±0.00 1.860±0.00 12.372±2.41 5.273±0.16 N/A
ENST00000502499 21.897±0.00 45.649±0.00 N/A 74.850±0.00 30.566±0.00 22.746±0.00 13.566±0.00 40.194±0.00 10.373±0.00 35.838±0.00 15.577±0.00 37.443±14.06 21.271±13.19 44.919±9.54
ENST00000504045 N/A N/A N/A N/A N/A N/A N/A N/A N/A 25.194±0.00 10.746±0.00 N/A N/A N/A
ENST00000505625 N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.171±0.00 N/A N/A N/A N/A
ENST00000509990 N/A N/A N/A N/A N/A 16.609±0.00 7.239±0.00 N/A N/A N/A 5.169±0.00 25.416±1.93 N/A N/A
ENST00000510056 13.169±0.00 N/A 29.057±0.00 N/A N/A 13.196±1.36 13.698±9.19 12.094±0.00 N/A 19.660±0.00 22.479±0.00 25.476±0.00 45.425±0.00 56.691±0.00
ENST00000512040 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 34.686±0.00 N/A 80.698±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005D1 CIL_0005D1_0001 CGP 5:138868923-139293557
CIL_0005D0 CIL_0005D0_0001 CGP 5:139273752-139369720

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0005198 TAS structural molecule activity
GO:0005515 IPI protein binding
GO:0005634 IEA:IDA nucleus
GO:0005637 TAS nuclear inner membrane
GO:0008219 IEA cell death
GO:0008270 IEA zinc ion binding
GO:0016020 IDA membrane
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000000394 matr3l1.1 matrin 3-like 1.1 protein_coding Danio_rerio
ENSDARG00000035734 MATR3 (3 of 3) matrin 3 protein_coding Danio_rerio
ENSMUSG00000037236 Matr3 matrin 3 protein_coding Mus_musculus
ENSMUSG00000099703 RP23-461O23.5 predicted gene 28285 protein_coding Mus_musculus

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