C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: matrin 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000620916 MATR3-203 ENSG00000015479 9606 + 5:139307416-139331677 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005D1 CIL_0005D1_0001 CGP 5:138868923-139293557
CIL_0005D0 CIL_0005D0_0001 CGP 5:139273752-139369720

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0005634 IEA nucleus
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000166793 Matr3-001 protein_coding Mus_musculus 0 1858
ENSMUST00000190121 Matr3-002 protein_coding Mus_musculus 0 1775
ENSMUST00000187389 Matr3-008 protein_coding Mus_musculus 0 900
ENSMUST00000188767 Matr3-004 nonsense_mediated_decay Mus_musculus 0 811
ENSMUST00000190653 Matr3-003 protein_coding Mus_musculus 0 782
ENSMUST00000186796 Matr3-005 protein_coding Mus_musculus 0 771
ENSMUST00000188275 Matr3-006 protein_coding Mus_musculus 0 697
ENSMUST00000190029 Matr3-007 protein_coding Mus_musculus 0 612
ENSMUST00000187980 Matr3-016 retained_intron Mus_musculus 0 196
ENSMUST00000186614 Matr3-010 protein_coding Mus_musculus 0 196
ENSMUST00000186292 Matr3-011 protein_coding Mus_musculus 0 196
ENSMUST00000188359 Matr3-015 protein_coding Mus_musculus 0 196
ENSMUST00000190458 RP23-461O23.5-005 protein_coding Mus_musculus 0 196
ENSMUST00000187513 RP23-461O23.5-001 protein_coding Mus_musculus 0 196
ENSMUST00000187543 Matr3-009 protein_coding Mus_musculus 2e-39 169
ENSMUST00000160839 Matr3-ps2-001 processed_pseudogene Mus_musculus 3e-33 148

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