C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: matrin 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000502499 MATR3-010 ENSG00000015479 9606 + 5:139293722-139330405 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000502499
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000502499 21.897±0.00 45.649±0.00 74.850±0.00 30.566±0.00 22.746±0.00 13.566±0.00 40.194±0.00 10.373±0.00 35.838±0.00 15.577±0.00 37.443±14.06 21.271±13.19 44.919±9.54

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005D1 CIL_0005D1_0001 CGP 5:138868923-139293557
CIL_0005D0 CIL_0005D0_0001 CGP 5:139273752-139369720

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0005634 IEA nucleus
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000190121 Matr3-002 protein_coding Mus_musculus 0 3518
ENSMUST00000166793 Matr3-001 protein_coding Mus_musculus 0 3398
ENSMUST00000187389 Matr3-008 protein_coding Mus_musculus 0 2523
ENSMUST00000190653 Matr3-003 protein_coding Mus_musculus 0 2403
ENSMUST00000186796 Matr3-005 protein_coding Mus_musculus 0 2392
ENSMUST00000188767 Matr3-004 nonsense_mediated_decay Mus_musculus 0 2388
ENSMUST00000188275 Matr3-006 protein_coding Mus_musculus 0 2320
ENSMUST00000190029 Matr3-007 protein_coding Mus_musculus 0 2235
ENSMUST00000187793 RP23-461O23.5-004 protein_coding Mus_musculus 0 531
ENSMUST00000160839 Matr3-ps2-001 processed_pseudogene Mus_musculus 0 457
ENSMUST00000186614 Matr3-010 protein_coding Mus_musculus 0 283
ENSMUST00000186158 Matr3-012 retained_intron Mus_musculus 0 263
ENSMUST00000189039 Matr3-013 protein_coding Mus_musculus 0 226
ENSMUST00000189163 RP23-461O23.5-003 protein_coding Mus_musculus 3e-27 128

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