C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: matrin 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000037236 Matr3 10090 + 18:35562146-35593835 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000166793 Matr3-001 35562158-35593835 protein_coding
  ENSMUST00000186158 Matr3-012 35577901-35579276 retained_intron
  ENSMUST00000186292 Matr3-011 35562683-35572203 protein_coding
  ENSMUST00000186614 Matr3-010 35562689-35579293 protein_coding
  ENSMUST00000186796 Matr3-005 35562219-35590581 protein_coding
  ENSMUST00000187389 Matr3-008 35562445-35590738 protein_coding
  ENSMUST00000187543 Matr3-009 35562192-35572123 protein_coding
  ENSMUST00000187980 Matr3-016 35571927-35573707 retained_intron
  ENSMUST00000188275 Matr3-006 35562299-35590529 protein_coding
  ENSMUST00000188359 Matr3-015 35562146-35572490 protein_coding
  ENSMUST00000188767 Matr3-004 35562217-35590621 nonsense_mediated_decay
  ENSMUST00000189019 Matr3-014 35579027-35580726 retained_intron
  ENSMUST00000189039 Matr3-013 35562487-35579008 protein_coding
  ENSMUST00000190029 Matr3-007 35562453-35590464 protein_coding
  ENSMUST00000190121 Matr3-002 35562211-35591419 protein_coding
  ENSMUST00000190653 Matr3-003 35562211-35590598 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000166793ENSMUST00000186292ENSMUST00000186614ENSMUST00000186796ENSMUST00000187389ENSMUST00000188359ENSMUST00000190029ENSMUST00000190121
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000166793 2.392±1.32 1.475±0.53 2.648±0.00 9.349±0.00 N/A 1.805±0.31 1.284±0.27 1.940±0.47 1.770±1.02 2.779±0.48 N/A 4.324±1.39 N/A 5.170±0.36
ENSMUST00000186292 N/A 1.874±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000186614 15.461±7.92 5.157±1.23 20.655±5.43 57.014±0.00 14.245±5.33 5.823±1.02 7.658±0.64 8.956±0.78 5.457±3.06 10.378±1.22 N/A 18.821±3.51 20.191±0.00 26.740±1.71
ENSMUST00000186796 3.761±0.00 2.841±0.00 N/A 95.641±0.00 N/A N/A N/A N/A 2.152±0.38 N/A N/A 35.641±26.05 55.700±14.45 116.093±0.00
ENSMUST00000187389 N/A N/A N/A 35.852±0.00 N/A N/A N/A N/A N/A N/A N/A 35.546±0.00 N/A N/A
ENSMUST00000188359 N/A 6.252±1.68 N/A N/A N/A N/A N/A N/A 5.383±0.55 N/A N/A 15.192±0.00 N/A N/A
ENSMUST00000190029 N/A N/A N/A N/A N/A N/A 4.078±1.20 N/A N/A N/A 5.975±1.74 21.979±5.03 16.330±3.14 90.409±0.00
ENSMUST00000190121 7.838±3.45 4.794±0.00 41.003±4.22 70.213±26.85 9.731±2.35 3.785±0.42 4.382±0.55 7.033±1.51 14.517±12.83 7.448±0.74 7.894±2.68 35.909±12.64 22.213±7.50 15.409±0.28

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005D0 CIL_0005D0_0002 CGP 18:35562146-35617186

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003723 IEA RNA binding
GO:0005634 IEA nucleus
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000000394 matr3l1.1 matrin 3-like 1.1 protein_coding Danio_rerio
ENSDARG00000035734 MATR3 (3 of 3) matrin 3 protein_coding Danio_rerio
ENSG00000015479 MATR3 matrin 3 protein_coding Homo_sapiens

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