C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sorting nexin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000380285 SNX1-005 ENSG00000028528 9606 + 15:64095991-64144231 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000380285
Transcript ID Adrenal Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000380285 5.295±0.00 2.448±0.00 2.003±0.00 3.992±0.00 1.417±0.00 2.066±0.00 0.419±0.00 2.709±0.05 2.971±0.17 3.023±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000509 CIL_000509_0002 CGP 15:64094123-64157481

Gene Ontology

GO IDEvidence TypeGO Description
GO:0006886 IEA intracellular protein transport
GO:0030904 IEA retromer complex
GO:0035091 IEA phosphatidylinositol binding
GO:0042147 IEA retrograde transport, endosome to Golgi
GO:0043231 IDA intracellular membrane-bounded organelle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034946 Snx1-001 protein_coding Mus_musculus 0 2124
ENSMUST00000145449 Snx1-003 retained_intron Mus_musculus 0 374
ENSMUST00000132841 Snx1-007 retained_intron Mus_musculus 0 206
ENSMUST00000143148 Snx1-002 retained_intron Mus_musculus 5.04467e-44 185
ENSMUST00000137542 Snx1-006 protein_coding Mus_musculus 9e-32 145
ENSMUST00000156289 Rgs20-006 retained_intron Mus_musculus 0.00001 58

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