C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sorting nexin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000559844 SNX1-001 ENSG00000028528 9606 + 15:64096000-64138006 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000559844
Transcript ID Adipose Adrenal Bladder Brain Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000559844 13.863±0.00 17.188±0.00 2.941±0.00 7.302±4.62 6.350±3.30 14.321±0.00 12.215±8.23 16.349±0.00 9.573±6.88 4.828±3.44 15.440±7.84 33.546±9.60 11.376±0.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000509 CIL_000509_0002 CGP 15:64094123-64157481

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005154 IDA epidermal growth factor receptor binding
GO:0005158 IDA insulin receptor binding
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005794 IEA Golgi apparatus
GO:0006886 IEA:IMP intracellular protein transport
GO:0010008 IDA endosome membrane
GO:0016020 IDA membrane
GO:0016023 IBA cytoplasmic membrane-bounded vesicle
GO:0030904 IEA retromer complex
GO:0031901 IDA early endosome membrane
GO:0034498 IMP early endosome to Golgi transport
GO:0035091 IEA:IDA phosphatidylinositol binding
GO:0042147 IEA retrograde transport, endosome to Golgi
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0043234 IDA protein complex
GO:1990459 IDA transferrin receptor binding
GO:1990460 IDA leptin receptor binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034946 Snx1-001 protein_coding Mus_musculus 0 2553
ENSMUST00000137542 Snx1-006 protein_coding Mus_musculus 0 680
ENSMUST00000145449 Snx1-003 retained_intron Mus_musculus 0 359
ENSMUST00000132841 Snx1-007 retained_intron Mus_musculus 0 206
ENSMUST00000143148 Snx1-002 retained_intron Mus_musculus 9.80909e-45 185

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