C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sorting nexin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000561026 SNX1-002 ENSG00000028528 9606 + 15:64096014-64137618 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; KidneyENST00000561026
Transcript ID Kidney
ENST00000561026 12.019±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000509 CIL_000509_0002 CGP 15:64094123-64157481

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005154 IDA epidermal growth factor receptor binding
GO:0005158 IDA insulin receptor binding
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005794 IEA Golgi apparatus
GO:0006886 IEA:IMP intracellular protein transport
GO:0010008 IDA endosome membrane
GO:0016020 IDA membrane
GO:0016023 IBA cytoplasmic membrane-bounded vesicle
GO:0030904 IEA retromer complex
GO:0031901 IDA early endosome membrane
GO:0034498 IMP early endosome to Golgi transport
GO:0035091 IEA:IDA phosphatidylinositol binding
GO:0042147 IEA retrograde transport, endosome to Golgi
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0043234 IDA protein complex
GO:1990459 IDA transferrin receptor binding
GO:1990460 IDA leptin receptor binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034946 Snx1-001 protein_coding Mus_musculus 0 1476
ENSMUST00000145449 Snx1-003 retained_intron Mus_musculus 0 342
ENSMUST00000132841 Snx1-007 retained_intron Mus_musculus 0 206
ENSMUST00000143148 Snx1-002 retained_intron Mus_musculus 8.40779e-45 185
ENSMUST00000137542 Snx1-006 protein_coding Mus_musculus 2e-31 141

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