C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: AT rich interactive domain 1B (SWI1-like)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000049618 ARID1B 9606 + 6:156777929-157210779 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000319584 ARID1B-004 156901373-157186620 protein_coding
  ENST00000346085 ARID1B-001 156777929-157210779 protein_coding
  ENST00000350026 ARID1B-009 156777929-157209150 protein_coding
  ENST00000400790 ARID1B-006 157148911-157186610 protein_coding
  ENST00000414678 ARID1B-005 156779433-157209267 protein_coding
  ENST00000452544 ARID1B-002 156935471-157152404 retained_intron
  ENST00000478761 ARID1B-003 157148790-157181198 processed_transcript
  ENST00000493658 ARID1B-007 157084766-157111150 retained_intron
  ENST00000494260 ARID1B-008 156829227-156870384 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000346085ENST00000350026ENST00000414678ENST00000452544
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000346085 1.697±0.00 2.331±0.00 N/A 1.168±0.00 N/A 1.588±0.00 1.479±0.00 1.152±0.00 0.697±0.34 0.938±0.00 N/A 2.479±0.49 0.545±0.24 2.374±0.00
ENST00000350026 2.639±0.00 1.561±0.00 4.981±0.00 0.935±0.12 1.285±0.32 1.215±0.00 1.957±1.01 1.918±0.00 1.375±0.86 2.674±0.00 2.525±0.00 3.715±1.21 0.657±0.05 2.713±0.00
ENST00000414678 8.059±0.00 8.209±0.00 N/A 3.557±0.95 4.406±2.33 5.587±1.84 2.039±1.70 4.122±1.63 2.149±0.50 4.947±0.29 5.904±1.78 8.081±2.53 3.269±1.92 5.656±3.43
ENST00000452544 N/A N/A N/A N/A 1.726±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00055G CIL_00055G_0001 CGP 6:155395370-157210779
CIL_00055F CIL_00055F_0001 CGP 6:156777929-157323601

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003713 NAS transcription coactivator activity
GO:0005488 IEA binding
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006338 IEA chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0007399 IEA nervous system development
GO:0016514 IDA SWI/SNF complex
GO:0048096 NAS chromatin-mediated maintenance of transcription
GO:0071565 IEA nBAF complex
GO:0090544 IEA BAF-type complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000092503 arid1b AT rich interactive domain 1B (SWI1-like) protein_coding Danio_rerio
ENSMUSG00000069729 Arid1b AT rich interactive domain 1B (SWI-like) protein_coding Mus_musculus

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