C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: AT rich interactive domain 1B (SWI1-like)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000346085 ARID1B-001 ENSG00000049618 9606 + 6:156777929-157210779 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000346085
Transcript ID Adipose Adrenal Brain Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000346085 1.697±0.00 2.331±0.00 1.168±0.00 1.588±0.00 1.479±0.00 1.152±0.00 0.697±0.34 0.938±0.00 2.479±0.49 0.545±0.24 2.374±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00055G CIL_00055G_0001 CGP 6:155395370-157210779
CIL_00055F CIL_00055F_0001 CGP 6:156777929-157323601

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003713 NAS transcription coactivator activity
GO:0005488 IEA binding
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006338 IEA chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0007399 IEA nervous system development
GO:0016514 IDA SWI/SNF complex
GO:0048096 NAS chromatin-mediated maintenance of transcription
GO:0071565 IEA nBAF complex
GO:0090544 IEA BAF-type complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000092723 Arid1b-002 protein_coding Mus_musculus 0 6632
ENSMUST00000115797 Arid1b-201 protein_coding Mus_musculus 0 6017
ENSMUST00000115799 Arid1b-001 protein_coding Mus_musculus 0 6017
ENSMUST00000156775 Arid1b-004 retained_intron Mus_musculus 0 313
ENSMUST00000146703 Arid1b-003 retained_intron Mus_musculus 0 198
ENSMUST00000124362 Arid1b-005 processed_transcript Mus_musculus 5.60519e-45 189
ENSMUST00000105897 Arid1a-201 protein_coding Mus_musculus 2e-28 134
ENSMUST00000145664 Arid1a-001 protein_coding Mus_musculus 2e-28 134
ENSDART00000138818 arid1b-001 protein_coding Danio_rerio 0.000000002 71

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