C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: AT rich interactive domain 1B (SWI1-like)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000350026 ARID1B-009 ENSG00000049618 9606 + 6:156777929-157209150 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000350026
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000350026 2.639±0.00 1.561±0.00 4.981±0.00 0.935±0.12 1.285±0.32 1.215±0.00 1.957±1.01 1.918±0.00 1.375±0.86 2.674±0.00 2.525±0.00 3.715±1.21 0.657±0.05 2.713±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00055G CIL_00055G_0001 CGP 6:155395370-157210779
CIL_00055F CIL_00055F_0001 CGP 6:156777929-157323601

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003713 NAS transcription coactivator activity
GO:0005488 IEA binding
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006338 IEA chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0007399 IEA nervous system development
GO:0016514 IDA SWI/SNF complex
GO:0048096 NAS chromatin-mediated maintenance of transcription
GO:0090544 IEA BAF-type complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000092723 Arid1b-002 protein_coding Mus_musculus 0 8780
ENSMUST00000115797 Arid1b-201 protein_coding Mus_musculus 0 5605
ENSMUST00000115799 Arid1b-001 protein_coding Mus_musculus 0 5605
ENSMUST00000146703 Arid1b-003 retained_intron Mus_musculus 0 501
ENSMUST00000156775 Arid1b-004 retained_intron Mus_musculus 0 472
ENSMUST00000124362 Arid1b-005 processed_transcript Mus_musculus 0 348
ENSDART00000138818 arid1b-001 protein_coding Danio_rerio 0.000000001 71

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