C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: AT rich interactive domain 1B (SWI-like)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000069729 Arid1b 10090 + 17:4994332-5347656 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000092723 Arid1b-002 4994939-5343505 protein_coding
  ENSMUST00000115797 Arid1b-201 4995074-5347656 protein_coding
  ENSMUST00000115799 Arid1b-001 4996421-5347656 protein_coding
  ENSMUST00000124362 Arid1b-005 4994332-5097733 processed_transcript
  ENSMUST00000146703 Arid1b-003 5040578-5127640 retained_intron
  ENSMUST00000156775 Arid1b-004 4996429-5098186 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000092723ENSMUST00000115797ENSMUST00000115799ENSMUST00000124362
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000092723 5.888±1.05 9.190±2.70 2.909±0.00 7.589±0.00 6.810±1.83 7.024±0.66 2.818±0.50 5.043±0.69 1.656±0.67 6.560±1.26 2.913±1.05 10.235±2.25 10.535±6.88 1.479±0.27
ENSMUST00000115797 N/A N/A 1.331±0.00 N/A 0.749±0.00 N/A N/A N/A 0.359±0.04 N/A 0.431±0.00 N/A 0.937±0.00 N/A
ENSMUST00000115799 2.986±0.00 7.253±2.96 1.628±0.00 2.003±1.24 3.850±2.25 3.832±1.13 1.612±0.00 3.940±0.96 0.893±0.36 5.339±1.61 0.640±0.06 5.968±2.25 1.534±0.60 0.062±0.00
ENSMUST00000124362 N/A 85.947±8.94 N/A N/A 76.427±12.14 51.555±9.53 N/A N/A N/A N/A N/A 73.356±13.22 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00055G CIL_00055G_0002 CGP 17:3635240-5347656
CIL_00055F CIL_00055F_0002 CGP 17:4994332-5440259

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006338 IC chromatin remodeling
GO:0016514 IEA SWI/SNF complex
GO:0071565 IDA nBAF complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000092503 arid1b AT rich interactive domain 1B (SWI1-like) protein_coding Danio_rerio
ENSG00000049618 ARID1B AT rich interactive domain 1B (SWI1-like) protein_coding Homo_sapiens

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