C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: AT rich interactive domain 1B (SWI1-like)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000414678 ARID1B-005 ENSG00000049618 9606 + 6:156779433-157209267 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000414678
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000414678 8.059±0.00 8.209±0.00 3.557±0.95 4.406±2.33 5.587±1.84 2.039±1.70 4.122±1.63 2.149±0.50 4.947±0.29 5.904±1.78 8.081±2.53 3.269±1.92 5.656±3.43

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00055G CIL_00055G_0001 CGP 6:155395370-157210779
CIL_00055F CIL_00055F_0001 CGP 6:156777929-157323601

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005488 IEA binding
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006338 IEA chromatin remodeling
GO:0090544 IEA BAF-type complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000115799 Arid1b-001 protein_coding Mus_musculus 0 7834
ENSMUST00000115797 Arid1b-201 protein_coding Mus_musculus 0 6979
ENSMUST00000092723 Arid1b-002 protein_coding Mus_musculus 0 4903
ENSMUST00000146703 Arid1b-003 retained_intron Mus_musculus 0 501
ENSMUST00000156775 Arid1b-004 retained_intron Mus_musculus 0 425
ENSMUST00000124362 Arid1b-005 processed_transcript Mus_musculus 0 348
ENSMUST00000105897 Arid1a-201 protein_coding Mus_musculus 2e-28 134
ENSMUST00000145664 Arid1a-001 protein_coding Mus_musculus 2e-28 134

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