C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_00055G_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000074771-ENSG00000049618 CGP 9606 6:155395370-157210779
GeneTranscriptPositionBiotype
ENSG00000074771 (NOX3)
NADPH oxidase 3
ENST00000159060 (NOX3-001) 155395370-155455903 protein_coding
ENSG00000218596 (RP11-2J18.1)
ENST00000406202 (RP11-2J18.1-001) 156976294-156977072 processed_pseudogene
ENSG00000220347 (RP11-230C9.1)
ENST00000402808 (RP11-230C9.1-001) 156662050-156662437 processed_pseudogene
ENSG00000227360 (RP11-518I13.1)
ENST00000433486 (RP11-518I13.1-001) 156497746-156498966 lincRNA
ENST00000449072 (RP11-518I13.1-002) 156493226-156499771 lincRNA
ENSG00000233044 (RP1-137K2.2)
ENST00000442936 (RP1-137K2.2-001) 157107727-157119706 antisense
ENSG00000270487 (RP11-230C9.3)
ENST00000604792 (RP11-230C9.3-001) 156780327-156780455 antisense
ENSG00000271265 (RP11-230C9.4)
ENST00000604082 (RP11-230C9.4-001) 156774217-156774662 lincRNA
ENSG00000271551 (RP11-230C9.2)
ENST00000603191 (RP11-230C9.2-001) 156776360-156777077 lincRNA
CIL_00055G_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000023802-ENSMUSG00000069729 CGP 10090 17:3635240-5347656
GeneTranscriptPositionBiotype
ENSMUSG00000023802 (Nox3)
NADPH oxidase 3
ENSMUST00000115800 (Nox3-001) 3635240-3696261 protein_coding
ENSMUSG00000069729 (Arid1b)
AT rich interactive domain 1B (SWI-like)
ENSMUST00000092723 (Arid1b-002) 4994939-5343505 protein_coding
ENSMUST00000115797 (Arid1b-201) 4995074-5347656 protein_coding
ENSMUST00000115799 (Arid1b-001) 4996421-5347656 protein_coding
ENSMUST00000124362 (Arid1b-005) 4994332-5097733 processed_transcript
ENSMUST00000146703 (Arid1b-003) 5040578-5127640 retained_intron
ENSMUST00000156775 (Arid1b-004) 4996429-5098186 retained_intron
ENSMUSG00000081783 (Gm15599)
predicted gene 15599
ENSMUST00000122283 (Gm15599-001) 5110781-5112119 unprocessed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00055G_0001ENSG00000074771ENST00000159060ENSG00000218596ENST00000406202ENSG00000220347ENST00000402808ENSG00000227360ENST00000433486ENST00000449072ENSG00000233044ENST00000442936ENSG00000270487ENST00000604792ENSG00000271265ENST00000604082ENSG00000271551ENST00000603191CIL_00055G_0002ENSMUSG00000023802ENSMUST00000115800ENSMUSG00000069729ENSMUST00000092723ENSMUST00000115797ENSMUST00000115799ENSMUST00000124362ENSMUST00000146703ENSMUST00000156775ENSMUSG00000081783ENSMUST00000122283
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00055G_0001ENSG00000074771ENST00000159060ENSG00000218596ENST00000406202ENSG00000220347ENST00000402808ENSG00000227360ENST00000433486ENSG00000233044ENST00000442936ENSG00000270487ENST00000604792ENSG00000271265ENST00000604082ENSG00000271551ENST00000603191CIL_00055G_0002ENSMUSG00000023802ENSMUST00000115800ENSMUSG00000069729ENSMUST00000092723ENSMUST00000115797ENSMUST00000115799ENSMUST00000124362ENSMUSG00000081783ENSMUST00000122283
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000074771 ENST00000159060 N/A N/A N/A 0.087±0.00 N/A N/A 0.014±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000218596 ENST00000406202 0.079±0.00 0.094±0.00 N/A 0.043±0.00 1.263±1.18 N/A N/A 0.972±0.80 0.148±0.00 N/A 1.137±1.10 2.116±1.57 N/A 0.122±0.03
ENSG00000220347 ENST00000402808 N/A 0.054±0.00 N/A N/A N/A N/A N/A N/A 0.098±0.00 N/A 0.047±0.00 N/A N/A 0.050±0.00
ENSG00000227360 ENST00000433486 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.263±0.00
ENST00000449072 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000233044 ENST00000442936 0.144±0.00 0.116±0.00 N/A N/A N/A N/A 0.075±0.01 N/A N/A N/A N/A 0.060±0.00 0.063±0.00 0.075±0.05
ENSG00000270487 ENST00000604792 N/A 0.595±0.00 N/A N/A N/A N/A N/A N/A N/A 5.115±0.00 N/A 0.481±0.00 N/A 0.717±0.00
ENSG00000271265 ENST00000604082 N/A 0.092±0.00 N/A 0.506±0.29 0.338±0.00 0.020±0.00 N/A 0.154±0.00 N/A N/A N/A 0.543±0.00 0.267±0.00 0.308±0.07
ENSG00000271551 ENST00000603191 0.159±0.00 0.070±0.00 N/A 1.937±0.58 0.439±0.00 0.238±0.00 0.294±0.21 0.583±0.06 0.404±0.22 0.850±0.46 0.220±0.00 0.400±0.28 0.195±0.14 0.499±0.13
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000023802 ENSMUST00000115800 N/A N/A N/A 0.012±0.01 N/A N/A N/A 0.024±0.01 N/A N/A N/A 0.017±0.01 0.003±0.00 0.169±0.00
ENSMUSG00000069729 ENSMUST00000092723 5.888±1.05 9.190±2.70 2.909±0.00 7.589±0.00 6.810±1.83 7.024±0.66 2.818±0.50 5.043±0.69 1.656±0.67 6.560±1.26 2.913±1.05 10.235±2.25 10.535±6.88 1.479±0.27
ENSMUST00000115797 N/A N/A 1.331±0.00 N/A 0.749±0.00 N/A N/A N/A 0.359±0.04 N/A 0.431±0.00 N/A 0.937±0.00 N/A
ENSMUST00000115799 2.986±0.00 7.253±2.96 1.628±0.00 2.003±1.24 3.850±2.25 3.832±1.13 1.612±0.00 3.940±0.96 0.893±0.36 5.339±1.61 0.640±0.06 5.968±2.25 1.534±0.60 0.062±0.00
ENSMUST00000124362 N/A 85.947±8.94 N/A N/A 76.427±12.14 51.555±9.53 N/A N/A N/A N/A N/A 73.356±13.22 N/A N/A
ENSMUST00000146703 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156775 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000081783 ENSMUST00000122283 0.409±0.22 0.198±0.12 0.238±0.00 0.060±0.00 0.335±0.09 0.325±0.22 0.204±0.13 0.151±0.05 0.126±0.11 0.641±0.19 N/A 0.536±0.34 0.146±0.10 0.144±0.09

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