C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000051108 HERPUD1 9606 + 16:56932048-56944863 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000300302 HERPUD1-002 56932147-56943881 protein_coding
  ENST00000344114 HERPUD1-004 56932147-56943881 protein_coding
  ENST00000379792 HERPUD1-003 56932160-56943886 protein_coding
  ENST00000439977 HERPUD1-001 56932048-56944863 protein_coding
  ENST00000562914 HERPUD1-009 56932142-56935554 retained_intron
  ENST00000563343 HERPUD1-013 56933208-56939946 protein_coding
  ENST00000563781 HERPUD1-017 56935378-56942202 processed_transcript
  ENST00000563911 HERPUD1-016 56936724-56943557 protein_coding
  ENST00000564678 HERPUD1-007 56935951-56943877 retained_intron
  ENST00000565966 HERPUD1-020 56932147-56940047 nonsense_mediated_decay
  ENST00000566550 HERPUD1-011 56934965-56935563 retained_intron
  ENST00000567944 HERPUD1-018 56939144-56940113 retained_intron
  ENST00000568358 HERPUD1-019 56935402-56943548 protein_coding
  ENST00000568651 HERPUD1-014 56939249-56943297 protein_coding
  ENST00000568676 HERPUD1-010 56932147-56935648 retained_intron
  ENST00000568814 HERPUD1-015 56942011-56943407 processed_transcript
  ENST00000569429 HERPUD1-012 56933184-56939992 protein_coding
  ENST00000569569 HERPUD1-005 56932147-56937413 retained_intron
  ENST00000570273 HERPUD1-006 56932148-56943599 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000300302ENST00000379792ENST00000439977ENST00000563781ENST00000563911ENST00000564678ENST00000568814ENST00000569569ENST00000570273
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000300302 14.351±0.00 N/A N/A 8.064±0.00 14.483±0.00 18.304±0.00 8.576±0.00 60.035±0.00 11.841±0.00 24.254±0.00 15.162±8.57 18.125±13.51 24.416±8.12 5.476±0.00
ENST00000379792 9.385±0.00 22.628±0.00 2.097±0.00 9.947±6.18 24.206±0.00 13.224±8.66 17.287±0.00 37.966±30.69 13.729±0.00 54.969±0.00 22.285±0.00 12.650±2.30 21.382±3.35 18.470±0.00
ENST00000439977 N/A 9.111±0.00 1.988±0.00 2.167±0.00 N/A 4.430±0.00 1.123±0.00 N/A N/A N/A N/A 3.222±0.00 N/A N/A
ENST00000563781 N/A N/A 6.891±0.00 N/A 12.607±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000563911 N/A N/A N/A 3.673±0.00 N/A N/A N/A N/A N/A N/A N/A 13.184±0.00 21.760±0.00 12.747±0.00
ENST00000564678 N/A N/A N/A N/A 5.372±0.00 N/A 2.429±0.00 4.811±0.00 2.404±0.00 5.574±0.00 N/A 2.214±0.00 N/A N/A
ENST00000568814 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 56.784±0.00 71.049±0.00 44.946±0.00
ENST00000569569 N/A N/A N/A N/A 5.043±0.00 N/A N/A N/A N/A 4.290±0.00 N/A N/A N/A N/A
ENST00000570273 N/A N/A N/A N/A N/A N/A 9.843±0.00 5.289±0.00 N/A 38.509±0.00 21.857±0.00 26.605±0.00 28.418±4.30 8.102±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000453 CIL_000453_0002 CGP 16:56865207-56944863
CIL_000452 CIL_000452_0002 CGP 16:56932048-56983845

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005783 IEA endoplasmic reticulum
GO:0005789 IDA endoplasmic reticulum membrane
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0006874 IEA cellular calcium ion homeostasis
GO:0006986 IEP response to unfolded protein
GO:0006987 TAS activation of signaling protein activity involved in unfolded protein response
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0030968 TAS endoplasmic reticulum unfolded protein response
GO:0031396 IEA regulation of protein ubiquitination
GO:0032092 IEA positive regulation of protein binding
GO:0043154 IEA negative regulation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0044267 TAS cellular protein metabolic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000024314 herpud1 homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1 protein_coding Danio_rerio
ENSMUSG00000031770 Herpud1 homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1 protein_coding Mus_musculus

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