C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SPO11 meiotic protein covalently bound to DSB
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000054796 SPO11 9606 + 20:57329759-57343994 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000345868 SPO11-002 57329813-57343994 protein_coding
  ENST00000371260 SPO11-003 57329859-57343994 protein_coding
  ENST00000371263 SPO11-001 57329759-57343994 protein_coding
  ENST00000418127 SPO11-004 57329934-57339026 protein_coding
  ENST00000494972 SPO11-005 57334750-57343994 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; TestisENST00000345868ENST00000371263ENST00000418127
Transcript ID Testis
ENST00000345868 1.682±0.00
ENST00000371263 1.210±0.00
ENST00000418127 1.850±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YW CIL_0008YW_0001 VISTA 20:56856738-57458908
CIL_0008TD CIL_0008TD_0001 VISTA 20:56859467-57462541
CIL_0008HJ CIL_0008HJ_0001 VISTA 20:57109440-57710361
CIL_0008BA CIL_0008BA_0001 VISTA 20:57139654-57744237
CIL_0006IN CIL_0006IN_0002 CGP 20:57168748-57343994
CIL_0002XR CIL_0002XR_0001 CGP 20:57329759-57379211

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000737 IEA DNA catabolic process, endonucleolytic
GO:0000781 IEA chromosome, telomeric region
GO:0001541 IEA ovarian follicle development
GO:0003677 IEA DNA binding
GO:0003824 IEA catalytic activity
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0005694 IEA chromosome
GO:0006259 IEA DNA metabolic process
GO:0007129 IEA synapsis
GO:0007131 IEA reciprocal meiotic recombination
GO:0007141 IEA male meiosis I
GO:0007283 TAS spermatogenesis
GO:0007286 IEA spermatid development
GO:0007292 TAS female gamete generation
GO:0016787 IEA hydrolase activity
GO:0034502 IEA protein localization to chromosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000013837 spo11 SPO11 meiotic protein covalently bound to DSB homolog (S. cerevisiae) protein_coding Danio_rerio
ENSMUSG00000005883 Spo11 SPO11 meiotic protein covalently bound to DSB homolog (S. cerevisiae) protein_coding Mus_musculus

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