C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006IN_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000063230-ENSDARG00000013837 CGP 7955 23:6472227-6624936
GeneTranscriptPositionBiotype
ENSDARG00000013837 (spo11)
SPO11 meiotic protein covalently bound to DSB homolog (S. cerevisiae) 		ENSDART00000005373 (spo11-001) 6595266-6624936 protein_coding
ENSDARG00000063230 (bmp7b)
bone morphogenetic protein 7b 		ENSDART00000092214 (bmp7b-201) 6472227-6572912 protein_coding
ENSDART00000138020 (bmp7b-001) 6472584-6572912 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0006IN_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000101144-ENSG00000054796 CGP 9606 20:57168748-57343994
GeneTranscriptPositionBiotype
ENSG00000054796 (SPO11)
SPO11 meiotic protein covalently bound to DSB 		ENST00000345868 (SPO11-002) 57329813-57343994 protein_coding
ENST00000371260 (SPO11-003) 57329859-57343994 protein_coding
ENST00000371263 (SPO11-001) 57329759-57343994 protein_coding
ENST00000418127 (SPO11-004) 57329934-57339026 protein_coding
ENST00000494972 (SPO11-005) 57334750-57343994 nonsense_mediated_decay
ENSG00000101144 (BMP7)
bone morphogenetic protein 7 		ENST00000395863 (BMP7-001) 57168748-57266628 protein_coding
ENST00000395864 (BMP7-003) 57170531-57266342 protein_coding
ENST00000433911 (BMP7-004) 57173220-57265778 protein_coding
ENST00000450594 (BMP7-002) 57172996-57266629 protein_coding
ENST00000460817 (BMP7-005) 57171039-57224685 processed_transcript
ENST00000463939 (BMP7-006) 57177696-57187156 processed_transcript
ENST00000476877 (BMP7-007) 57170917-57173589 retained_intron
ENST00000524700 (BMP7-009) 57202474-57224840 processed_transcript
ENST00000530870 (BMP7-008) 57202474-57244034 processed_transcript
ENSG00000226308 (RP4-813D12.3)
 ENST00000412321 (RP4-813D12.3-001) 57266797-57282998 lincRNA
ENST00000426580 (RP4-813D12.3-002) 57266802-57280485 lincRNA
ENSG00000235032 (BMP7-AS1)
BMP7 antisense RNA 1 		ENST00000445956 (BMP7-AS1-001) 57214872-57215866 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_0006IN_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000008999-ENSMUSG00000005883 CGP 10090 2:172868012-172993576
GeneTranscriptPositionBiotype
ENSMUSG00000005883 (Spo11)
SPO11 meiotic protein covalently bound to DSB homolog (S. cerevisiae) 		ENSMUST00000050442 (Spo11-001) 172979849-172993576 protein_coding
ENSMUST00000109125 (Spo11-003) 172979842-172993565 protein_coding
ENSMUST00000109126 (Spo11-002) 172979849-172993567 protein_coding
ENSMUST00000144044 (Spo11-004) 172977700-172993571 retained_intron
ENSMUST00000156471 (Spo11-005) 172985877-172992053 processed_transcript
ENSMUSG00000008999 (Bmp7)
bone morphogenetic protein 7 		ENSMUST00000009143 (Bmp7-001) 172868012-172940321 protein_coding
ENSMUST00000137247 (Bmp7-002) 172916118-172940092 retained_intron

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006IN_0001ENSDARG00000013837ENSDART00000005373ENSDARG00000063230ENSDART00000092214ENSDART00000138020CIL_0006IN_0002ENSG00000054796ENST00000345868ENST00000371260ENST00000371263ENST00000418127ENST00000494972ENSG00000101144ENST00000395863ENST00000395864ENST00000433911ENST00000450594ENST00000460817ENST00000463939ENST00000476877ENST00000524700ENST00000530870ENSG00000226308ENST00000412321ENST00000426580ENSG00000235032ENST00000445956CIL_0006IN_0003ENSMUSG00000005883ENSMUST00000050442ENSMUST00000109125ENSMUST00000109126ENSMUST00000144044ENSMUST00000156471ENSMUSG00000008999ENSMUST00000009143ENSMUST00000137247
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006IN_0001ENSDARG00000013837ENSDART00000005373ENSDARG00000063230ENSDART00000092214ENSDART00000138020CIL_0006IN_0002ENSG00000054796ENST00000345868ENST00000371263ENST00000418127ENSG00000101144ENST00000395863ENST00000395864ENST00000433911ENST00000450594ENST00000460817ENST00000476877ENSG00000226308ENST00000412321ENSG00000235032ENST00000445956CIL_0006IN_0003ENSMUSG00000005883ENSMUST00000050442ENSMUST00000109125ENSMUST00000109126ENSMUST00000144044ENSMUST00000156471ENSMUSG00000008999ENSMUST00000009143ENSMUST00000137247
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000013837 ENSDART00000005373 N/A N/A N/A 0.654±0.39 N/A N/A 0.050±0.01 2.052±0.00 0.084±0.00 N/A N/A N/A N/A N/A
ENSDARG00000063230 ENSDART00000092214 N/A N/A N/A 0.903±0.59 N/A N/A 1.511±0.00 0.367±0.00 0.018±0.00 N/A 0.505±0.00 N/A N/A N/A
ENSDART00000138020 N/A N/A N/A 0.111±0.00 N/A N/A 0.125±0.00 N/A N/A N/A 0.229±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000054796 ENST00000345868 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.682±0.00
ENST00000371260 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000371263 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.210±0.00
ENST00000418127 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.850±0.00
ENST00000494972 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000101144 ENST00000395863 N/A 0.078±0.00 0.575±0.00 6.084±4.30 N/A 1.030±0.81 1.958±1.64 2.486±0.00 0.424±0.00 0.844±0.00 N/A 1.241±0.00 14.779±2.57 1.273±1.19
ENST00000395864 0.414±0.00 N/A N/A 0.935±0.00 N/A N/A 0.795±0.58 N/A 0.563±0.00 N/A N/A 4.343±4.19 24.516±7.41 0.337±0.00
ENST00000433911 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.161±0.00 N/A N/A N/A N/A
ENST00000450594 N/A N/A N/A N/A N/A 0.120±0.00 N/A N/A 0.357±0.00 N/A N/A N/A N/A N/A
ENST00000460817 N/A N/A N/A N/A N/A 0.374±0.00 N/A N/A N/A N/A 0.217±0.00 13.390±0.00 29.981±11.62 N/A
ENST00000463939 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476877 N/A 0.113±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000524700 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000530870 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000226308 ENST00000412321 0.035±0.00 0.311±0.00 N/A 0.601±0.50 0.115±0.00 0.105±0.00 0.138±0.00 0.190±0.00 0.182±0.15 0.217±0.00 N/A 0.137±0.00 0.111±0.05 0.392±0.00
ENST00000426580 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000235032 ENST00000445956 N/A N/A N/A 0.115±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.650±1.16
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000005883 ENSMUST00000050442 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.425±0.00
ENSMUST00000109125 0.176±0.00 N/A N/A N/A N/A N/A 0.010±0.00 0.061±0.04 0.012±0.01 0.041±0.01 0.032±0.00 0.115±0.10 0.041±0.03 18.574±10.59
ENSMUST00000109126 N/A N/A N/A N/A N/A N/A N/A 0.065±0.00 N/A N/A N/A N/A N/A N/A
ENSMUST00000144044 0.088±0.06 0.027±0.00 0.101±0.05 0.229±0.14 0.295±0.07 0.117±0.05 0.048±0.03 0.049±0.03 0.027±0.02 0.094±0.01 0.021±0.01 0.096±0.05 0.020±0.01 4.789±0.71
ENSMUST00000156471 N/A N/A N/A 0.209±0.00 N/A 0.384±0.14 0.065±0.00 0.124±0.05 N/A N/A 0.305±0.00 0.385±0.00 0.091±0.00 17.287±0.00
ENSMUSG00000008999 ENSMUST00000009143 8.649±8.45 27.973±5.32 14.639±0.61 5.970±3.59 3.184±1.31 8.524±0.68 0.567±0.22 18.459±1.83 0.908±0.57 1.625±0.29 0.136±0.03 7.807±3.55 1.569±1.20 0.576±0.38
ENSMUST00000137247 0.145±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.236±0.00 N/A N/A N/A

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