C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002XR_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000054796-ENSG00000101146 CGP 9606 20:57329759-57379211
GeneTranscriptPositionBiotype
ENSG00000054796 (SPO11)
SPO11 meiotic protein covalently bound to DSB 		ENST00000345868 (SPO11-002) 57329813-57343994 protein_coding
ENST00000371260 (SPO11-003) 57329859-57343994 protein_coding
ENST00000371263 (SPO11-001) 57329759-57343994 protein_coding
ENST00000418127 (SPO11-004) 57329934-57339026 protein_coding
ENST00000494972 (SPO11-005) 57334750-57343994 nonsense_mediated_decay
ENSG00000101146 (RAE1)
ribonucleic acid export 1 		ENST00000371242 (RAE1-002) 57351223-57379211 protein_coding
ENST00000395840 (RAE1-003) 57351544-57379211 protein_coding
ENST00000395841 (RAE1-001) 57351010-57379211 protein_coding
ENST00000411894 (RAE1-006) 57351510-57366843 protein_coding
ENST00000429339 (RAE1-007) 57351510-57366843 protein_coding
ENST00000452119 (RAE1-005) 57351577-57356512 protein_coding
ENST00000462438 (RAE1-004) 57371134-57378463 retained_intron
ENST00000492498 (RAE1-008) 57351274-57378099 nonsense_mediated_decay
ENST00000527947 (RAE1-010) 57351252-57375106 protein_coding
ENSG00000228995 (MTND1P9)
MT-ND1 pseudogene 9 		ENST00000453775 (MTND1P9-001) 57357426-57358369 processed_pseudogene
ENSG00000256222 (MTRNR2L3)
MT-RNR2-like 3 		ENST00000543500 (MTRNR2L3-001) 57358442-57359980 protein_coding

Homo sapiens Ensembl (GRCh38)

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CIL_0002XR_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000005883-ENSMUSG00000027509 CGP 10090 2:172977700-173015739
GeneTranscriptPositionBiotype
ENSMUSG00000005883 (Spo11)
SPO11 meiotic protein covalently bound to DSB homolog (S. cerevisiae) 		ENSMUST00000050442 (Spo11-001) 172979849-172993576 protein_coding
ENSMUST00000109125 (Spo11-003) 172979842-172993565 protein_coding
ENSMUST00000109126 (Spo11-002) 172979849-172993567 protein_coding
ENSMUST00000144044 (Spo11-004) 172977700-172993571 retained_intron
ENSMUST00000156471 (Spo11-005) 172985877-172992053 processed_transcript
ENSMUSG00000027509 (Rae1)
RAE1 RNA export 1 homolog (S. pombe) 		ENSMUST00000029013 (Rae1-001) 173000117-173015739 protein_coding
ENSMUST00000123039 (Rae1-004) 173011664-173012821 retained_intron
ENSMUST00000124793 (Rae1-003) 173006644-173009444 retained_intron
ENSMUST00000132212 (Rae1-002) 173000124-173009445 protein_coding
ENSMUST00000138237 (Rae1-005) 173012461-173015427 retained_intron

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002XR_0001ENSG00000054796ENST00000345868ENST00000371260ENST00000371263ENST00000418127ENST00000494972ENSG00000101146ENST00000371242ENST00000395840ENST00000395841ENST00000411894ENST00000429339ENST00000452119ENST00000462438ENST00000492498ENST00000527947ENSG00000228995ENST00000453775ENSG00000256222ENST00000543500CIL_0002XR_0002ENSMUSG00000005883ENSMUST00000050442ENSMUST00000109125ENSMUST00000109126ENSMUST00000144044ENSMUST00000156471ENSMUSG00000027509ENSMUST00000029013ENSMUST00000123039ENSMUST00000124793ENSMUST00000132212ENSMUST00000138237
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002XR_0001ENSG00000054796ENST00000345868ENST00000371263ENST00000418127ENSG00000101146ENST00000371242ENST00000395840ENST00000395841ENST00000429339ENST00000462438ENST00000492498ENST00000527947ENSG00000228995ENST00000453775ENSG00000256222ENST00000543500CIL_0002XR_0002ENSMUSG00000005883ENSMUST00000050442ENSMUST00000109125ENSMUST00000109126ENSMUST00000144044ENSMUST00000156471ENSMUSG00000027509ENSMUST00000029013ENSMUST00000124793ENSMUST00000132212
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000054796 ENST00000345868 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.682±0.00
ENST00000371260 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000371263 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.210±0.00
ENST00000418127 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.850±0.00
ENST00000494972 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000101146 ENST00000371242 1.880±0.00 1.171±0.00 N/A 6.822±0.00 2.157±0.00 3.056±0.00 N/A N/A 0.776±0.00 1.642±0.00 1.941±0.00 10.173±11.75 7.765±0.00 26.176±0.00
ENST00000395840 N/A N/A N/A N/A N/A N/A N/A N/A 0.218±0.00 N/A N/A N/A N/A 20.509±0.00
ENST00000395841 N/A N/A N/A 1.643±0.00 N/A N/A N/A N/A 0.462±0.00 0.753±0.00 N/A 3.014±0.16 1.716±0.47 N/A
ENST00000411894 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000429339 N/A N/A N/A N/A N/A N/A 0.494±0.00 N/A N/A N/A N/A N/A 5.180±0.00 46.263±0.00
ENST00000452119 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000462438 N/A 0.963±0.00 0.471±0.00 N/A 0.434±0.00 N/A N/A 0.356±0.00 0.164±0.00 0.396±0.03 N/A 0.712±0.00 N/A N/A
ENST00000492498 1.665±0.00 N/A N/A 4.171±0.00 1.626±0.19 1.873±0.39 1.240±0.97 0.418±0.00 1.436±0.00 2.678±0.00 2.365±0.00 1.264±0.00 5.883±0.00 N/A
ENST00000527947 1.802±0.00 2.161±0.00 N/A N/A 1.127±0.00 1.593±0.00 N/A N/A N/A 1.194±0.00 0.912±0.17 3.656±0.00 N/A N/A
ENSG00000228995 ENST00000453775 0.013±0.00 0.449±0.00 0.973±0.00 0.232±0.06 0.070±0.01 0.172±0.16 0.084±0.04 0.061±0.00 N/A N/A N/A 0.314±0.20 0.064±0.00 0.078±0.06
ENSG00000256222 ENST00000543500 0.138±0.00 0.221±0.00 N/A 0.570±0.00 0.192±0.00 0.435±0.19 0.232±0.00 0.574±0.00 0.006±0.00 0.075±0.06 0.458±0.00 0.023±0.00 0.019±0.00 0.067±0.03
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000005883 ENSMUST00000050442 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.425±0.00
ENSMUST00000109125 0.176±0.00 N/A N/A N/A N/A N/A 0.010±0.00 0.061±0.04 0.012±0.01 0.041±0.01 0.032±0.00 0.115±0.10 0.041±0.03 18.574±10.59
ENSMUST00000109126 N/A N/A N/A N/A N/A N/A N/A 0.065±0.00 N/A N/A N/A N/A N/A N/A
ENSMUST00000144044 0.088±0.06 0.027±0.00 0.101±0.05 0.229±0.14 0.295±0.07 0.117±0.05 0.048±0.03 0.049±0.03 0.027±0.02 0.094±0.01 0.021±0.01 0.096±0.05 0.020±0.01 4.789±0.71
ENSMUST00000156471 N/A N/A N/A 0.209±0.00 N/A 0.384±0.14 0.065±0.00 0.124±0.05 N/A N/A 0.305±0.00 0.385±0.00 0.091±0.00 17.287±0.00
ENSMUSG00000027509 ENSMUST00000029013 25.543±5.34 125.977±5.17 20.004±4.38 19.741±11.74 28.135±11.60 21.560±7.93 9.586±1.84 21.832±2.11 20.776±9.36 18.593±2.44 4.895±0.85 39.626±22.25 27.441±15.77 28.163±12.58
ENSMUST00000123039 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000124793 N/A N/A N/A 14.295±0.00 N/A N/A N/A N/A N/A N/A N/A 16.648±0.00 22.173±0.00 N/A
ENSMUST00000132212 8.661±0.00 N/A N/A 13.966±0.00 N/A 12.781±0.76 5.678±0.00 N/A 6.359±0.45 N/A N/A 28.121±13.42 19.889±5.65 15.169±0.00
ENSMUST00000138237 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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