C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SPO11 meiotic protein covalently bound to DSB
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000345868 SPO11-002 ENSG00000054796 9606 + 20:57329813-57343994 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; TestisENST00000345868
Transcript ID Testis
ENST00000345868 1.682±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YW CIL_0008YW_0001 VISTA 20:56856738-57458908
CIL_0008TD CIL_0008TD_0001 VISTA 20:56859467-57462541
CIL_0008HJ CIL_0008HJ_0001 VISTA 20:57109440-57710361
CIL_0008BA CIL_0008BA_0001 VISTA 20:57139654-57744237
CIL_0006IN CIL_0006IN_0002 CGP 20:57168748-57343994
CIL_0002XR CIL_0002XR_0001 CGP 20:57329759-57379211

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000737 IEA DNA catabolic process, endonucleolytic
GO:0003677 IEA DNA binding
GO:0003824 IEA catalytic activity
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0005694 IEA chromosome
GO:0006259 IEA DNA metabolic process
GO:0007131 IEA reciprocal meiotic recombination
GO:0007283 TAS spermatogenesis
GO:0007292 TAS female gamete generation
GO:0016787 IEA hydrolase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000109125 Spo11-003 protein_coding Mus_musculus 0 857
ENSMUST00000109126 Spo11-002 protein_coding Mus_musculus 0 233
ENSMUST00000050442 Spo11-001 protein_coding Mus_musculus 0.0000000000001 82

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