C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: PR domain containing 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000061455 PRDM6 9606 + 5:123089121-123194266 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000407847 PRDM6-001 123089121-123194266 protein_coding
  ENST00000427739 PRDM6-004 123173401-123180319 processed_transcript
  ENST00000434521 PRDM6-003 123099745-123180285 nonsense_mediated_decay
  ENST00000464424 PRDM6-002 123099746-123170935 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000407847ENST00000434521ENST00000464424
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000407847 N/A 0.148±0.00 N/A 0.060±0.04 0.221±0.00 1.972±0.00 0.051±0.00 0.041±0.04 1.053±1.05 1.053±0.30 0.009±0.00 0.537±0.35 0.859±0.08 0.431±0.00
ENST00000434521 N/A N/A N/A 0.101±0.00 N/A N/A 0.178±0.00 N/A 0.193±0.00 4.916±0.00 0.074±0.00 N/A N/A N/A
ENST00000464424 0.255±0.00 N/A 0.768±0.00 N/A N/A N/A N/A N/A N/A N/A 0.339±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007LD CIL_0007LD_0001 UCNEbase 5:122918992-123140193
CIL_0004AY CIL_0004AY_0001 CGP 5:123023250-123194266
CIL_0004AX CIL_0004AX_0001 CGP 5:123089121-123423592

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0018024 IEA histone-lysine N-methyltransferase activity
GO:0022008 IEA neurogenesis
GO:0034968 IEA histone lysine methylation
GO:0042803 IEA protein homodimerization activity
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding
GO:0051151 IEA negative regulation of smooth muscle cell differentiation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075623 prdm6 PR domain containing 6 protein_coding Danio_rerio
ENSDARG00000090200 PRDM6 (2 of 2) PR domain containing 6 protein_coding Danio_rerio
ENSMUSG00000069378 Prdm6 PR domain containing 6 protein_coding Mus_musculus

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