C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: PR domain containing 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000069378 Prdm6 10090 + 18:53464546-53575907 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000091900 Prdm6-201 53464546-53575857 protein_coding
  ENSMUST00000115398 Prdm6-003 53551594-53575857 protein_coding
  ENSMUST00000115399 Prdm6-002 53472981-53575907 protein_coding
  ENSMUST00000154557 Prdm6-001 53465051-53575857 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000091900ENSMUST00000115398ENSMUST00000115399ENSMUST00000154557
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000091900 0.107±0.01 0.160±0.04 3.327±0.42 0.261±0.21 1.299±0.41 1.264±0.26 0.338±0.04 0.117±0.06 0.073±0.05 4.133±2.32 N/A 2.796±1.22 0.966±0.46 0.043±0.00
ENSMUST00000115398 0.083±0.00 0.107±0.02 9.911±0.00 0.038±0.00 0.761±0.00 N/A 0.174±0.00 0.066±0.00 0.064±0.04 5.454±0.15 0.043±0.02 1.249±0.74 0.920±0.22 0.290±0.12
ENSMUST00000115399 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.023±0.00 0.683±0.37 0.257±0.00 N/A
ENSMUST00000154557 0.068±0.01 N/A 3.789±0.00 0.375±0.00 0.415±0.00 0.380±0.00 0.196±0.02 0.014±0.00 0.071±0.02 N/A N/A 0.825±0.40 0.583±0.29 0.107±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007LD CIL_0007LD_0003 UCNEbase 18:53312823-53553068
CIL_0004AY CIL_0004AY_0002 CGP 18:53406341-53575907
CIL_0004AX CIL_0004AX_0002 CGP 18:53464546-53744547

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0018024 IEA histone-lysine N-methyltransferase activity
GO:0022008 IDA neurogenesis
GO:0034968 IEA histone lysine methylation
GO:0042803 IDA protein homodimerization activity
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding
GO:0051151 IMP negative regulation of smooth muscle cell differentiation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075623 prdm6 PR domain containing 6 protein_coding Danio_rerio
ENSDARG00000090200 PRDM6 (2 of 2) PR domain containing 6 protein_coding Danio_rerio
ENSG00000061455 PRDM6 PR domain containing 6 protein_coding Homo_sapiens

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