C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PR domain containing 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000434521 PRDM6-003 ENSG00000061455 9606 + 5:123099745-123180285 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartLiverLungMuscleENST00000434521
Transcript ID Brain Heart Liver Lung Muscle
ENST00000434521 0.101±0.00 0.178±0.00 0.193±0.00 4.916±0.00 0.074±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007LD CIL_0007LD_0001 UCNEbase 5:122918992-123140193
CIL_0004AY CIL_0004AY_0001 CGP 5:123023250-123194266
CIL_0004AX CIL_0004AX_0001 CGP 5:123089121-123423592

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000115398 Prdm6-003 protein_coding Mus_musculus 0 584
ENSMUST00000091900 Prdm6-201 protein_coding Mus_musculus 0 582
ENSMUST00000115399 Prdm6-002 protein_coding Mus_musculus 0 582
ENSMUST00000154557 Prdm6-001 protein_coding Mus_musculus 0 582

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