| Source ID |
Type |
Tax ID |
Position |
| PPIC |
UCNEbase |
7955 |
Zv9_NA783:49172-49405  |
| Gene | Transcript | Position | Biotype |
|---|
Notice (8): Undefined index: CIL_0007LD_0005 [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007LD_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007LD_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000061455' => 'PR domain containing 6',
'ENSG00000064652' => 'sorting nexin 24',
'ENSG00000168938' => 'peptidylprolyl isomerase C (cyclophilin C)',
'ENSG00000223652' => null,
'ENSG00000249996' => null,
'ENSG00000263432' => 'RNA, 7SL, cytoplasmic 689, pseudogene',
'ENSG00000276047' => 'Metazoan signal recognition particle RNA',
'ENSMUSG00000024535' => 'sorting nexing 24',
'ENSMUSG00000024538' => 'peptidylprolyl isomerase C',
'ENSMUSG00000069378' => 'PR domain containing 6'
),
'gene_name_arr' => array(
'ENSG00000061455' => 'PRDM6',
'ENSG00000064652' => 'SNX24',
'ENSG00000168938' => 'PPIC',
'ENSG00000223652' => 'AC106786.1',
'ENSG00000249996' => 'RP11-359P5.1',
'ENSG00000263432' => 'RN7SL689P',
'ENSG00000276047' => 'Metazoa_SRP',
'ENSMUSG00000024535' => 'Snx24',
'ENSMUSG00000024538' => 'Ppic',
'ENSMUSG00000069378' => 'Prdm6'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 3 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 4 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 8 => 'Adrenal',
(int) 15 => 'Bladder',
(int) 24 => 'Brain',
(int) 36 => 'Breast',
(int) 46 => 'Colon',
(int) 56 => 'Heart',
(int) 69 => 'Kidney',
(int) 80 => 'Liver',
(int) 94 => 'Lung',
(int) 104 => 'Muscle',
(int) 117 => 'Ovary',
(int) 128 => 'Placenta',
(int) 139 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 30,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000407847' => array(
'start' => '123089121',
'end' => '123194266',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PRDM6-001'
),
'ENST00000427739' => array(
'start' => '123173401',
'end' => '123180319',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'PRDM6-004'
),
'ENST00000434521' => array(
'start' => '123099745',
'end' => '123180285',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'PRDM6-003'
),
'ENST00000464424' => array(
'start' => '123099746',
'end' => '123170935',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'PRDM6-002'
),
'ENST00000261369' => array(
'start' => '122845449',
'end' => '123009212',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SNX24-001'
),
'ENST00000395451' => array(
'start' => '122845605',
'end' => '123008161',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SNX24-002'
),
'ENST00000502387' => array(
'start' => '122936733',
'end' => '123029354',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SNX24-010'
),
'ENST00000503149' => array(
'start' => '122936734',
'end' => '123007774',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SNX24-009'
),
'ENST00000506996' => array(
'start' => '122845626',
'end' => '123002142',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SNX24-004'
),
'ENST00000507364' => array(
'start' => '122948596',
'end' => '123002145',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SNX24-012'
),
'ENST00000510914' => array(
'start' => '122946055',
'end' => '123029350',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SNX24-011'
),
'ENST00000511211' => array(
'start' => '122844232',
'end' => '122999984',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SNX24-006'
),
'ENST00000511545' => array(
'start' => '122845663',
'end' => '123007782',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SNX24-008'
),
'ENST00000513613' => array(
'start' => '122843439',
'end' => '122998314',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SNX24-007'
),
'ENST00000513881' => array(
'start' => '122845518',
'end' => '123008610',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SNX24-003'
),
'ENST00000515729' => array(
'start' => '122998269',
'end' => '123002142',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SNX24-013'
),
'ENST00000306442' => array(
'start' => '123023250',
'end' => '123036741',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PPIC-001'
),
'ENST00000415659' => array(
'start' => '123028493',
'end' => '123036725',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'PPIC-002'
),
'ENST00000442777' => array(
'start' => '123087248',
'end' => '123089295',
'transcript_biotype' => 'antisense',
'transcript_name' => 'AC106786.1-002'
),
'ENST00000458103' => array(
'start' => '123087634',
'end' => '123090299',
'transcript_biotype' => 'antisense',
'transcript_name' => 'AC106786.1-001'
),
'ENST00000506859' => array(
'start' => '123036271',
'end' => '123054667',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-359P5.1-001'
),
'ENST00000577215' => array(
'start' => '123022487',
'end' => '123022783',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'RN7SL689P-201'
),
'ENST00000579731' => array(
'start' => '123070782',
'end' => '123071080',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Metazoa_SRP.1-351'
),
'ENSMUST00000025417' => array(
'start' => '53245769',
'end' => '53390823',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Snx24-201'
),
'ENSMUST00000165032' => array(
'start' => '53245662',
'end' => '53390823',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Snx24-202'
),
'ENSMUST00000025419' => array(
'start' => '53406341',
'end' => '53418007',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ppic-201'
),
'ENSMUST00000091900' => array(
'start' => '53464546',
'end' => '53575857',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Prdm6-201'
),
'ENSMUST00000115398' => array(
'start' => '53551594',
'end' => '53575857',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Prdm6-003'
),
'ENSMUST00000115399' => array(
'start' => '53472981',
'end' => '53575907',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Prdm6-002'
),
'ENSMUST00000154557' => array(
'start' => '53465051',
'end' => '53575857',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Prdm6-001'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007LD_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007LD_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007LD_0001' => array(
'genes_in_region' => array(
'ENSG00000061455' => array(
[maximum depth reached]
),
'ENSG00000064652' => array(
[maximum depth reached]
),
'ENSG00000168938' => array(
[maximum depth reached]
),
'ENSG00000263432' => array(
[maximum depth reached]
),
'ENSG00000276047' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adrenal',
(int) 1 => 'Brain',
(int) 2 => 'Breast',
(int) 3 => 'Colon',
(int) 4 => 'Heart',
(int) 5 => 'Kidney',
(int) 6 => 'Liver',
(int) 7 => 'Lung',
(int) 8 => 'Muscle',
(int) 9 => 'Ovary',
(int) 10 => 'Placenta',
(int) 11 => 'Testis',
(int) 12 => 'Brain',
(int) 13 => 'Heart',
(int) 14 => 'Liver',
(int) 15 => 'Lung',
(int) 16 => 'Muscle',
(int) 17 => 'Adipose',
(int) 18 => 'Bladder',
(int) 19 => 'Muscle',
(int) 20 => 'Bladder',
(int) 21 => 'Brain',
(int) 22 => 'Breast',
(int) 23 => 'Colon',
(int) 24 => 'Heart',
(int) 25 => 'Kidney',
(int) 26 => 'Liver',
(int) 27 => 'Lung',
(int) 28 => 'Muscle',
(int) 29 => 'Ovary',
(int) 30 => 'Placenta',
(int) 31 => 'Testis',
(int) 32 => 'Kidney',
(int) 33 => 'Bladder',
(int) 34 => 'Brain',
(int) 35 => 'Breast',
(int) 36 => 'Heart',
(int) 37 => 'Liver',
(int) 38 => 'Muscle',
(int) 39 => 'Testis',
(int) 40 => 'Colon',
(int) 41 => 'Adipose',
(int) 42 => 'Adrenal',
(int) 43 => 'Bladder',
(int) 44 => 'Brain',
(int) 45 => 'Breast',
(int) 46 => 'Colon',
(int) 47 => 'Heart',
(int) 48 => 'Kidney',
(int) 49 => 'Liver',
(int) 50 => 'Lung',
(int) 51 => 'Muscle',
(int) 52 => 'Ovary',
(int) 53 => 'Placenta',
(int) 54 => 'Testis',
(int) 55 => 'Muscle',
(int) 56 => 'Liver',
(int) 57 => 'Brain',
(int) 58 => 'Colon',
(int) 59 => 'Heart',
(int) 60 => 'Kidney',
(int) 61 => 'Liver',
(int) 62 => 'Lung',
(int) 63 => 'Muscle',
(int) 64 => 'Ovary',
(int) 65 => 'Placenta',
(int) 66 => 'Testis',
(int) 67 => 'Adipose',
(int) 68 => 'Adrenal',
(int) 69 => 'Brain',
(int) 70 => 'Breast',
(int) 71 => 'Colon',
(int) 72 => 'Heart',
(int) 73 => 'Kidney',
(int) 74 => 'Liver',
(int) 75 => 'Lung',
(int) 76 => 'Ovary',
(int) 77 => 'Testis'
)
),
'CIL_0007LD_0003' => array(
'genes_in_region' => array(
'ENSMUSG00000024535' => array(
[maximum depth reached]
),
'ENSMUSG00000024538' => array(
[maximum depth reached]
),
'ENSMUSG00000069378' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Heart',
(int) 1 => 'Liver',
(int) 2 => 'Muscle',
(int) 3 => 'Placenta',
(int) 4 => 'Testis',
(int) 5 => 'Adipose',
(int) 6 => 'Adrenal',
(int) 7 => 'Bladder',
(int) 8 => 'Brain',
(int) 9 => 'Breast',
(int) 10 => 'Colon',
(int) 11 => 'Heart',
(int) 12 => 'Kidney',
(int) 13 => 'Liver',
(int) 14 => 'Lung',
(int) 15 => 'Muscle',
(int) 16 => 'Ovary',
(int) 17 => 'Placenta',
(int) 18 => 'Testis',
(int) 19 => 'Adipose',
(int) 20 => 'Adrenal',
(int) 21 => 'Bladder',
(int) 22 => 'Brain',
(int) 23 => 'Breast',
(int) 24 => 'Colon',
(int) 25 => 'Heart',
(int) 26 => 'Kidney',
(int) 27 => 'Liver',
(int) 28 => 'Lung',
(int) 29 => 'Muscle',
(int) 30 => 'Ovary',
(int) 31 => 'Placenta',
(int) 32 => 'Testis',
(int) 33 => 'Adipose',
(int) 34 => 'Adrenal',
(int) 35 => 'Bladder',
(int) 36 => 'Brain',
(int) 37 => 'Breast',
(int) 38 => 'Colon',
(int) 39 => 'Heart',
(int) 40 => 'Kidney',
(int) 41 => 'Liver',
(int) 42 => 'Lung',
(int) 43 => 'Ovary',
(int) 44 => 'Placenta',
(int) 45 => 'Testis',
(int) 46 => 'Adipose',
(int) 47 => 'Adrenal',
(int) 48 => 'Bladder',
(int) 49 => 'Brain',
(int) 50 => 'Breast',
(int) 51 => 'Heart',
(int) 52 => 'Kidney',
(int) 53 => 'Liver',
(int) 54 => 'Lung',
(int) 55 => 'Muscle',
(int) 56 => 'Ovary',
(int) 57 => 'Placenta',
(int) 58 => 'Testis',
(int) 59 => 'Muscle',
(int) 60 => 'Ovary',
(int) 61 => 'Placenta',
(int) 62 => 'Adipose',
(int) 63 => 'Bladder',
(int) 64 => 'Brain',
(int) 65 => 'Breast',
(int) 66 => 'Colon',
(int) 67 => 'Heart',
(int) 68 => 'Kidney',
(int) 69 => 'Liver',
(int) 70 => 'Ovary',
(int) 71 => 'Placenta',
(int) 72 => 'Testis'
)
)
)
$gene_desc_arr = array(
'ENSG00000061455' => 'PR domain containing 6',
'ENSG00000064652' => 'sorting nexin 24',
'ENSG00000168938' => 'peptidylprolyl isomerase C (cyclophilin C)',
'ENSG00000223652' => null,
'ENSG00000249996' => null,
'ENSG00000263432' => 'RNA, 7SL, cytoplasmic 689, pseudogene',
'ENSG00000276047' => 'Metazoan signal recognition particle RNA',
'ENSMUSG00000024535' => 'sorting nexing 24',
'ENSMUSG00000024538' => 'peptidylprolyl isomerase C',
'ENSMUSG00000069378' => 'PR domain containing 6'
)
$gene_name_arr = array(
'ENSG00000061455' => 'PRDM6',
'ENSG00000064652' => 'SNX24',
'ENSG00000168938' => 'PPIC',
'ENSG00000223652' => 'AC106786.1',
'ENSG00000249996' => 'RP11-359P5.1',
'ENSG00000263432' => 'RN7SL689P',
'ENSG00000276047' => 'Metazoa_SRP',
'ENSMUSG00000024535' => 'Snx24',
'ENSMUSG00000024538' => 'Ppic',
'ENSMUSG00000069378' => 'Prdm6'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007LD_0001',
'tax_id' => '9606',
'chromosome' => '5',
'seq_start' => '122918992',
'seq_end' => '123140193',
'region_length' => '221201',
'region_type' => 'UCNEbase',
'el_id' => 'PPIC'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007LD_0002',
'tax_id' => '9606',
'chromosome' => '5',
'seq_start' => '123140194',
'seq_end' => '123171822',
'region_length' => '31628',
'region_type' => 'UCNEbase',
'el_id' => 'PPIC'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007LD_0003',
'tax_id' => '10090',
'chromosome' => '18',
'seq_start' => '53312823',
'seq_end' => '53553068',
'region_length' => '240245',
'region_type' => 'UCNEbase',
'el_id' => 'PPIC'
)
),
(int) 3 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007LD_0004',
'tax_id' => '7955',
'chromosome' => '8',
'seq_start' => '164206',
'seq_end' => '164484',
'region_length' => '278',
'region_type' => 'UCNEbase',
'el_id' => 'PPIC'
)
),
(int) 4 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007LD_0005',
'tax_id' => '7955',
'chromosome' => 'Zv9_NA783',
'seq_start' => '49172',
'seq_end' => '49405',
'region_length' => '233',
'region_type' => 'UCNEbase',
'el_id' => 'PPIC'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 8 => 'Adrenal',
(int) 15 => 'Bladder',
(int) 24 => 'Brain',
(int) 36 => 'Breast',
(int) 46 => 'Colon',
(int) 56 => 'Heart',
(int) 69 => 'Kidney',
(int) 80 => 'Liver',
(int) 94 => 'Lung',
(int) 104 => 'Muscle',
(int) 117 => 'Ovary',
(int) 128 => 'Placenta',
(int) 139 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 30
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000407847' => array(
'start' => '123089121',
'end' => '123194266',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PRDM6-001'
),
'ENST00000427739' => array(
'start' => '123173401',
'end' => '123180319',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'PRDM6-004'
),
'ENST00000434521' => array(
'start' => '123099745',
'end' => '123180285',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'PRDM6-003'
),
'ENST00000464424' => array(
'start' => '123099746',
'end' => '123170935',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'PRDM6-002'
),
'ENST00000261369' => array(
'start' => '122845449',
'end' => '123009212',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SNX24-001'
),
'ENST00000395451' => array(
'start' => '122845605',
'end' => '123008161',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SNX24-002'
),
'ENST00000502387' => array(
'start' => '122936733',
'end' => '123029354',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SNX24-010'
),
'ENST00000503149' => array(
'start' => '122936734',
'end' => '123007774',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SNX24-009'
),
'ENST00000506996' => array(
'start' => '122845626',
'end' => '123002142',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SNX24-004'
),
'ENST00000507364' => array(
'start' => '122948596',
'end' => '123002145',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SNX24-012'
),
'ENST00000510914' => array(
'start' => '122946055',
'end' => '123029350',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SNX24-011'
),
'ENST00000511211' => array(
'start' => '122844232',
'end' => '122999984',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SNX24-006'
),
'ENST00000511545' => array(
'start' => '122845663',
'end' => '123007782',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SNX24-008'
),
'ENST00000513613' => array(
'start' => '122843439',
'end' => '122998314',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SNX24-007'
),
'ENST00000513881' => array(
'start' => '122845518',
'end' => '123008610',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SNX24-003'
),
'ENST00000515729' => array(
'start' => '122998269',
'end' => '123002142',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SNX24-013'
),
'ENST00000306442' => array(
'start' => '123023250',
'end' => '123036741',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PPIC-001'
),
'ENST00000415659' => array(
'start' => '123028493',
'end' => '123036725',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'PPIC-002'
),
'ENST00000442777' => array(
'start' => '123087248',
'end' => '123089295',
'transcript_biotype' => 'antisense',
'transcript_name' => 'AC106786.1-002'
),
'ENST00000458103' => array(
'start' => '123087634',
'end' => '123090299',
'transcript_biotype' => 'antisense',
'transcript_name' => 'AC106786.1-001'
),
'ENST00000506859' => array(
'start' => '123036271',
'end' => '123054667',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-359P5.1-001'
),
'ENST00000577215' => array(
'start' => '123022487',
'end' => '123022783',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'RN7SL689P-201'
),
'ENST00000579731' => array(
'start' => '123070782',
'end' => '123071080',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Metazoa_SRP.1-351'
),
'ENSMUST00000025417' => array(
'start' => '53245769',
'end' => '53390823',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Snx24-201'
),
'ENSMUST00000165032' => array(
'start' => '53245662',
'end' => '53390823',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Snx24-202'
),
'ENSMUST00000025419' => array(
'start' => '53406341',
'end' => '53418007',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ppic-201'
),
'ENSMUST00000091900' => array(
'start' => '53464546',
'end' => '53575857',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Prdm6-201'
),
'ENSMUST00000115398' => array(
'start' => '53551594',
'end' => '53575857',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Prdm6-003'
),
'ENSMUST00000115399' => array(
'start' => '53472981',
'end' => '53575907',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Prdm6-002'
),
'ENSMUST00000154557' => array(
'start' => '53465051',
'end' => '53575857',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Prdm6-001'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007LD_0001' => array(
'genes_in_region' => array(
'ENSG00000061455' => array(
[maximum depth reached]
),
'ENSG00000064652' => array(
[maximum depth reached]
),
'ENSG00000168938' => array(
[maximum depth reached]
),
'ENSG00000263432' => array(
[maximum depth reached]
),
'ENSG00000276047' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adrenal',
(int) 1 => 'Brain',
(int) 2 => 'Breast',
(int) 3 => 'Colon',
(int) 4 => 'Heart',
(int) 5 => 'Kidney',
(int) 6 => 'Liver',
(int) 7 => 'Lung',
(int) 8 => 'Muscle',
(int) 9 => 'Ovary',
(int) 10 => 'Placenta',
(int) 11 => 'Testis',
(int) 12 => 'Brain',
(int) 13 => 'Heart',
(int) 14 => 'Liver',
(int) 15 => 'Lung',
(int) 16 => 'Muscle',
(int) 17 => 'Adipose',
(int) 18 => 'Bladder',
(int) 19 => 'Muscle',
(int) 20 => 'Bladder',
(int) 21 => 'Brain',
(int) 22 => 'Breast',
(int) 23 => 'Colon',
(int) 24 => 'Heart',
(int) 25 => 'Kidney',
(int) 26 => 'Liver',
(int) 27 => 'Lung',
(int) 28 => 'Muscle',
(int) 29 => 'Ovary',
(int) 30 => 'Placenta',
(int) 31 => 'Testis',
(int) 32 => 'Kidney',
(int) 33 => 'Bladder',
(int) 34 => 'Brain',
(int) 35 => 'Breast',
(int) 36 => 'Heart',
(int) 37 => 'Liver',
(int) 38 => 'Muscle',
(int) 39 => 'Testis',
(int) 40 => 'Colon',
(int) 41 => 'Adipose',
(int) 42 => 'Adrenal',
(int) 43 => 'Bladder',
(int) 44 => 'Brain',
(int) 45 => 'Breast',
(int) 46 => 'Colon',
(int) 47 => 'Heart',
(int) 48 => 'Kidney',
(int) 49 => 'Liver',
(int) 50 => 'Lung',
(int) 51 => 'Muscle',
(int) 52 => 'Ovary',
(int) 53 => 'Placenta',
(int) 54 => 'Testis',
(int) 55 => 'Muscle',
(int) 56 => 'Liver',
(int) 57 => 'Brain',
(int) 58 => 'Colon',
(int) 59 => 'Heart',
(int) 60 => 'Kidney',
(int) 61 => 'Liver',
(int) 62 => 'Lung',
(int) 63 => 'Muscle',
(int) 64 => 'Ovary',
(int) 65 => 'Placenta',
(int) 66 => 'Testis',
(int) 67 => 'Adipose',
(int) 68 => 'Adrenal',
(int) 69 => 'Brain',
(int) 70 => 'Breast',
(int) 71 => 'Colon',
(int) 72 => 'Heart',
(int) 73 => 'Kidney',
(int) 74 => 'Liver',
(int) 75 => 'Lung',
(int) 76 => 'Ovary',
(int) 77 => 'Testis'
)
),
'CIL_0007LD_0003' => array(
'genes_in_region' => array(
'ENSMUSG00000024535' => array(
[maximum depth reached]
),
'ENSMUSG00000024538' => array(
[maximum depth reached]
),
'ENSMUSG00000069378' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Heart',
(int) 1 => 'Liver',
(int) 2 => 'Muscle',
(int) 3 => 'Placenta',
(int) 4 => 'Testis',
(int) 5 => 'Adipose',
(int) 6 => 'Adrenal',
(int) 7 => 'Bladder',
(int) 8 => 'Brain',
(int) 9 => 'Breast',
(int) 10 => 'Colon',
(int) 11 => 'Heart',
(int) 12 => 'Kidney',
(int) 13 => 'Liver',
(int) 14 => 'Lung',
(int) 15 => 'Muscle',
(int) 16 => 'Ovary',
(int) 17 => 'Placenta',
(int) 18 => 'Testis',
(int) 19 => 'Adipose',
(int) 20 => 'Adrenal',
(int) 21 => 'Bladder',
(int) 22 => 'Brain',
(int) 23 => 'Breast',
(int) 24 => 'Colon',
(int) 25 => 'Heart',
(int) 26 => 'Kidney',
(int) 27 => 'Liver',
(int) 28 => 'Lung',
(int) 29 => 'Muscle',
(int) 30 => 'Ovary',
(int) 31 => 'Placenta',
(int) 32 => 'Testis',
(int) 33 => 'Adipose',
(int) 34 => 'Adrenal',
(int) 35 => 'Bladder',
(int) 36 => 'Brain',
(int) 37 => 'Breast',
(int) 38 => 'Colon',
(int) 39 => 'Heart',
(int) 40 => 'Kidney',
(int) 41 => 'Liver',
(int) 42 => 'Lung',
(int) 43 => 'Ovary',
(int) 44 => 'Placenta',
(int) 45 => 'Testis',
(int) 46 => 'Adipose',
(int) 47 => 'Adrenal',
(int) 48 => 'Bladder',
(int) 49 => 'Brain',
(int) 50 => 'Breast',
(int) 51 => 'Heart',
(int) 52 => 'Kidney',
(int) 53 => 'Liver',
(int) 54 => 'Lung',
(int) 55 => 'Muscle',
(int) 56 => 'Ovary',
(int) 57 => 'Placenta',
(int) 58 => 'Testis',
(int) 59 => 'Muscle',
(int) 60 => 'Ovary',
(int) 61 => 'Placenta',
(int) 62 => 'Adipose',
(int) 63 => 'Bladder',
(int) 64 => 'Brain',
(int) 65 => 'Breast',
(int) 66 => 'Colon',
(int) 67 => 'Heart',
(int) 68 => 'Kidney',
(int) 69 => 'Liver',
(int) 70 => 'Ovary',
(int) 71 => 'Placenta',
(int) 72 => 'Testis'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007LD_0005',
'tax_id' => '7955',
'chromosome' => 'Zv9_NA783',
'seq_start' => '49172',
'seq_end' => '49405',
'region_length' => '233',
'region_type' => 'UCNEbase',
'el_id' => 'PPIC'
)
)
$gene_el = array(
'ENSMUST00000091900' => array(
'Adipose' => array(
'average_FPKM' => '0.107',
'stddev_FPKM' => '0.01'
),
'Adrenal' => array(
'average_FPKM' => '0.160',
'stddev_FPKM' => '0.04'
),
'Bladder' => array(
'average_FPKM' => '3.327',
'stddev_FPKM' => '0.42'
),
'Brain' => array(
'average_FPKM' => '0.261',
'stddev_FPKM' => '0.21'
),
'Breast' => array(
'average_FPKM' => '1.299',
'stddev_FPKM' => '0.41'
),
'Colon' => array(
'average_FPKM' => '1.264',
'stddev_FPKM' => '0.26'
),
'Heart' => array(
'average_FPKM' => '0.338',
'stddev_FPKM' => '0.04'
),
'Kidney' => array(
'average_FPKM' => '0.117',
'stddev_FPKM' => '0.06'
),
'Liver' => array(
'average_FPKM' => '0.073',
'stddev_FPKM' => '0.05'
),
'Lung' => array(
'average_FPKM' => '4.133',
'stddev_FPKM' => '2.32'
),
'Ovary' => array(
'average_FPKM' => '2.796',
'stddev_FPKM' => '1.22'
),
'Placenta' => array(
'average_FPKM' => '0.966',
'stddev_FPKM' => '0.46'
),
'Testis' => array(
'average_FPKM' => '0.043',
'stddev_FPKM' => '0.00'
)
),
'ENSMUST00000115398' => array(
'Adipose' => array(
'average_FPKM' => '0.083',
'stddev_FPKM' => '0.00'
),
'Adrenal' => array(
'average_FPKM' => '0.107',
'stddev_FPKM' => '0.02'
),
'Bladder' => array(
'average_FPKM' => '9.911',
'stddev_FPKM' => '0.00'
),
'Brain' => array(
'average_FPKM' => '0.038',
'stddev_FPKM' => '0.00'
),
'Breast' => array(
'average_FPKM' => '0.761',
'stddev_FPKM' => '0.00'
),
'Heart' => array(
'average_FPKM' => '0.174',
'stddev_FPKM' => '0.00'
),
'Kidney' => array(
'average_FPKM' => '0.066',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '0.064',
'stddev_FPKM' => '0.04'
),
'Lung' => array(
'average_FPKM' => '5.454',
'stddev_FPKM' => '0.15'
),
'Muscle' => array(
'average_FPKM' => '0.043',
'stddev_FPKM' => '0.02'
),
'Ovary' => array(
'average_FPKM' => '1.249',
'stddev_FPKM' => '0.74'
),
'Placenta' => array(
'average_FPKM' => '0.920',
'stddev_FPKM' => '0.22'
),
'Testis' => array(
'average_FPKM' => '0.290',
'stddev_FPKM' => '0.12'
)
),
'ENSMUST00000115399' => array(
'Muscle' => array(
'average_FPKM' => '0.023',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.683',
'stddev_FPKM' => '0.37'
),
'Placenta' => array(
'average_FPKM' => '0.257',
'stddev_FPKM' => '0.00'
)
),
'ENSMUST00000154557' => array(
'Adipose' => array(
'average_FPKM' => '0.068',
'stddev_FPKM' => '0.01'
),
'Bladder' => array(
'average_FPKM' => '3.789',
'stddev_FPKM' => '0.00'
),
'Brain' => array(
'average_FPKM' => '0.375',
'stddev_FPKM' => '0.00'
),
'Breast' => array(
'average_FPKM' => '0.415',
'stddev_FPKM' => '0.00'
),
'Colon' => array(
'average_FPKM' => '0.380',
'stddev_FPKM' => '0.00'
),
'Heart' => array(
'average_FPKM' => '0.196',
'stddev_FPKM' => '0.02'
),
'Kidney' => array(
'average_FPKM' => '0.014',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '0.071',
'stddev_FPKM' => '0.02'
),
'Ovary' => array(
'average_FPKM' => '0.825',
'stddev_FPKM' => '0.40'
),
'Placenta' => array(
'average_FPKM' => '0.583',
'stddev_FPKM' => '0.29'
),
'Testis' => array(
'average_FPKM' => '0.107',
'stddev_FPKM' => '0.01'
)
)
)
$gene_key = 'ENSMUSG00000069378'
$is_first = false
$tran_el = array(
'Adipose' => array(
'average_FPKM' => '0.068',
'stddev_FPKM' => '0.01'
),
'Bladder' => array(
'average_FPKM' => '3.789',
'stddev_FPKM' => '0.00'
),
'Brain' => array(
'average_FPKM' => '0.375',
'stddev_FPKM' => '0.00'
),
'Breast' => array(
'average_FPKM' => '0.415',
'stddev_FPKM' => '0.00'
),
'Colon' => array(
'average_FPKM' => '0.380',
'stddev_FPKM' => '0.00'
),
'Heart' => array(
'average_FPKM' => '0.196',
'stddev_FPKM' => '0.02'
),
'Kidney' => array(
'average_FPKM' => '0.014',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '0.071',
'stddev_FPKM' => '0.02'
),
'Ovary' => array(
'average_FPKM' => '0.825',
'stddev_FPKM' => '0.40'
),
'Placenta' => array(
'average_FPKM' => '0.583',
'stddev_FPKM' => '0.29'
),
'Testis' => array(
'average_FPKM' => '0.107',
'stddev_FPKM' => '0.01'
)
)
$tran_key = 'ENSMUST00000154557'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007LD_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007LD_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000061455' => 'PR domain containing 6',
'ENSG00000064652' => 'sorting nexin 24',
'ENSG00000168938' => 'peptidylprolyl isomerase C (cyclophilin C)',
'ENSG00000223652' => null,
'ENSG00000249996' => null,
'ENSG00000263432' => 'RNA, 7SL, cytoplasmic 689, pseudogene',
'ENSG00000276047' => 'Metazoan signal recognition particle RNA',
'ENSMUSG00000024535' => 'sorting nexing 24',
'ENSMUSG00000024538' => 'peptidylprolyl isomerase C',
'ENSMUSG00000069378' => 'PR domain containing 6'
),
'gene_name_arr' => array(
'ENSG00000061455' => 'PRDM6',
'ENSG00000064652' => 'SNX24',
'ENSG00000168938' => 'PPIC',
'ENSG00000223652' => 'AC106786.1',
'ENSG00000249996' => 'RP11-359P5.1',
'ENSG00000263432' => 'RN7SL689P',
'ENSG00000276047' => 'Metazoa_SRP',
'ENSMUSG00000024535' => 'Snx24',
'ENSMUSG00000024538' => 'Ppic',
'ENSMUSG00000069378' => 'Prdm6'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 3 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 4 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 8 => 'Adrenal',
(int) 15 => 'Bladder',
(int) 24 => 'Brain',
(int) 36 => 'Breast',
(int) 46 => 'Colon',
(int) 56 => 'Heart',
(int) 69 => 'Kidney',
(int) 80 => 'Liver',
(int) 94 => 'Lung',
(int) 104 => 'Muscle',
(int) 117 => 'Ovary',
(int) 128 => 'Placenta',
(int) 139 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 30,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000407847' => array(
'start' => '123089121',
'end' => '123194266',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PRDM6-001'
),
'ENST00000427739' => array(
'start' => '123173401',
'end' => '123180319',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'PRDM6-004'
),
'ENST00000434521' => array(
'start' => '123099745',
'end' => '123180285',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'PRDM6-003'
),
'ENST00000464424' => array(
'start' => '123099746',
'end' => '123170935',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'PRDM6-002'
),
'ENST00000261369' => array(
'start' => '122845449',
'end' => '123009212',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SNX24-001'
),
'ENST00000395451' => array(
'start' => '122845605',
'end' => '123008161',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SNX24-002'
),
'ENST00000502387' => array(
'start' => '122936733',
'end' => '123029354',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SNX24-010'
),
'ENST00000503149' => array(
'start' => '122936734',
'end' => '123007774',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SNX24-009'
),
'ENST00000506996' => array(
'start' => '122845626',
'end' => '123002142',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SNX24-004'
),
'ENST00000507364' => array(
'start' => '122948596',
'end' => '123002145',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SNX24-012'
),
'ENST00000510914' => array(
'start' => '122946055',
'end' => '123029350',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SNX24-011'
),
'ENST00000511211' => array(
'start' => '122844232',
'end' => '122999984',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SNX24-006'
),
'ENST00000511545' => array(
'start' => '122845663',
'end' => '123007782',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SNX24-008'
),
'ENST00000513613' => array(
'start' => '122843439',
'end' => '122998314',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SNX24-007'
),
'ENST00000513881' => array(
'start' => '122845518',
'end' => '123008610',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SNX24-003'
),
'ENST00000515729' => array(
'start' => '122998269',
'end' => '123002142',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SNX24-013'
),
'ENST00000306442' => array(
'start' => '123023250',
'end' => '123036741',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PPIC-001'
),
'ENST00000415659' => array(
'start' => '123028493',
'end' => '123036725',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'PPIC-002'
),
'ENST00000442777' => array(
'start' => '123087248',
'end' => '123089295',
'transcript_biotype' => 'antisense',
'transcript_name' => 'AC106786.1-002'
),
'ENST00000458103' => array(
'start' => '123087634',
'end' => '123090299',
'transcript_biotype' => 'antisense',
'transcript_name' => 'AC106786.1-001'
),
'ENST00000506859' => array(
'start' => '123036271',
'end' => '123054667',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-359P5.1-001'
),
'ENST00000577215' => array(
'start' => '123022487',
'end' => '123022783',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'RN7SL689P-201'
),
'ENST00000579731' => array(
'start' => '123070782',
'end' => '123071080',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Metazoa_SRP.1-351'
),
'ENSMUST00000025417' => array(
'start' => '53245769',
'end' => '53390823',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Snx24-201'
),
'ENSMUST00000165032' => array(
'start' => '53245662',
'end' => '53390823',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Snx24-202'
),
'ENSMUST00000025419' => array(
'start' => '53406341',
'end' => '53418007',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ppic-201'
),
'ENSMUST00000091900' => array(
'start' => '53464546',
'end' => '53575857',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Prdm6-201'
),
'ENSMUST00000115398' => array(
'start' => '53551594',
'end' => '53575857',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Prdm6-003'
),
'ENSMUST00000115399' => array(
'start' => '53472981',
'end' => '53575907',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Prdm6-002'
),
'ENSMUST00000154557' => array(
'start' => '53465051',
'end' => '53575857',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Prdm6-001'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007LD_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007LD_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007LD_0001' => array(
'genes_in_region' => array(
'ENSG00000061455' => array(
[maximum depth reached]
),
'ENSG00000064652' => array(
[maximum depth reached]
),
'ENSG00000168938' => array(
[maximum depth reached]
),
'ENSG00000263432' => array(
[maximum depth reached]
),
'ENSG00000276047' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adrenal',
(int) 1 => 'Brain',
(int) 2 => 'Breast',
(int) 3 => 'Colon',
(int) 4 => 'Heart',
(int) 5 => 'Kidney',
(int) 6 => 'Liver',
(int) 7 => 'Lung',
(int) 8 => 'Muscle',
(int) 9 => 'Ovary',
(int) 10 => 'Placenta',
(int) 11 => 'Testis',
(int) 12 => 'Brain',
(int) 13 => 'Heart',
(int) 14 => 'Liver',
(int) 15 => 'Lung',
(int) 16 => 'Muscle',
(int) 17 => 'Adipose',
(int) 18 => 'Bladder',
(int) 19 => 'Muscle',
(int) 20 => 'Bladder',
(int) 21 => 'Brain',
(int) 22 => 'Breast',
(int) 23 => 'Colon',
(int) 24 => 'Heart',
(int) 25 => 'Kidney',
(int) 26 => 'Liver',
(int) 27 => 'Lung',
(int) 28 => 'Muscle',
(int) 29 => 'Ovary',
(int) 30 => 'Placenta',
(int) 31 => 'Testis',
(int) 32 => 'Kidney',
(int) 33 => 'Bladder',
(int) 34 => 'Brain',
(int) 35 => 'Breast',
(int) 36 => 'Heart',
(int) 37 => 'Liver',
(int) 38 => 'Muscle',
(int) 39 => 'Testis',
(int) 40 => 'Colon',
(int) 41 => 'Adipose',
(int) 42 => 'Adrenal',
(int) 43 => 'Bladder',
(int) 44 => 'Brain',
(int) 45 => 'Breast',
(int) 46 => 'Colon',
(int) 47 => 'Heart',
(int) 48 => 'Kidney',
(int) 49 => 'Liver',
(int) 50 => 'Lung',
(int) 51 => 'Muscle',
(int) 52 => 'Ovary',
(int) 53 => 'Placenta',
(int) 54 => 'Testis',
(int) 55 => 'Muscle',
(int) 56 => 'Liver',
(int) 57 => 'Brain',
(int) 58 => 'Colon',
(int) 59 => 'Heart',
(int) 60 => 'Kidney',
(int) 61 => 'Liver',
(int) 62 => 'Lung',
(int) 63 => 'Muscle',
(int) 64 => 'Ovary',
(int) 65 => 'Placenta',
(int) 66 => 'Testis',
(int) 67 => 'Adipose',
(int) 68 => 'Adrenal',
(int) 69 => 'Brain',
(int) 70 => 'Breast',
(int) 71 => 'Colon',
(int) 72 => 'Heart',
(int) 73 => 'Kidney',
(int) 74 => 'Liver',
(int) 75 => 'Lung',
(int) 76 => 'Ovary',
(int) 77 => 'Testis'
)
),
'CIL_0007LD_0003' => array(
'genes_in_region' => array(
'ENSMUSG00000024535' => array(
[maximum depth reached]
),
'ENSMUSG00000024538' => array(
[maximum depth reached]
),
'ENSMUSG00000069378' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Heart',
(int) 1 => 'Liver',
(int) 2 => 'Muscle',
(int) 3 => 'Placenta',
(int) 4 => 'Testis',
(int) 5 => 'Adipose',
(int) 6 => 'Adrenal',
(int) 7 => 'Bladder',
(int) 8 => 'Brain',
(int) 9 => 'Breast',
(int) 10 => 'Colon',
(int) 11 => 'Heart',
(int) 12 => 'Kidney',
(int) 13 => 'Liver',
(int) 14 => 'Lung',
(int) 15 => 'Muscle',
(int) 16 => 'Ovary',
(int) 17 => 'Placenta',
(int) 18 => 'Testis',
(int) 19 => 'Adipose',
(int) 20 => 'Adrenal',
(int) 21 => 'Bladder',
(int) 22 => 'Brain',
(int) 23 => 'Breast',
(int) 24 => 'Colon',
(int) 25 => 'Heart',
(int) 26 => 'Kidney',
(int) 27 => 'Liver',
(int) 28 => 'Lung',
(int) 29 => 'Muscle',
(int) 30 => 'Ovary',
(int) 31 => 'Placenta',
(int) 32 => 'Testis',
(int) 33 => 'Adipose',
(int) 34 => 'Adrenal',
(int) 35 => 'Bladder',
(int) 36 => 'Brain',
(int) 37 => 'Breast',
(int) 38 => 'Colon',
(int) 39 => 'Heart',
(int) 40 => 'Kidney',
(int) 41 => 'Liver',
(int) 42 => 'Lung',
(int) 43 => 'Ovary',
(int) 44 => 'Placenta',
(int) 45 => 'Testis',
(int) 46 => 'Adipose',
(int) 47 => 'Adrenal',
(int) 48 => 'Bladder',
(int) 49 => 'Brain',
(int) 50 => 'Breast',
(int) 51 => 'Heart',
(int) 52 => 'Kidney',
(int) 53 => 'Liver',
(int) 54 => 'Lung',
(int) 55 => 'Muscle',
(int) 56 => 'Ovary',
(int) 57 => 'Placenta',
(int) 58 => 'Testis',
(int) 59 => 'Muscle',
(int) 60 => 'Ovary',
(int) 61 => 'Placenta',
(int) 62 => 'Adipose',
(int) 63 => 'Bladder',
(int) 64 => 'Brain',
(int) 65 => 'Breast',
(int) 66 => 'Colon',
(int) 67 => 'Heart',
(int) 68 => 'Kidney',
(int) 69 => 'Liver',
(int) 70 => 'Ovary',
(int) 71 => 'Placenta',
(int) 72 => 'Testis'
)
)
)
$gene_desc_arr = array(
'ENSG00000061455' => 'PR domain containing 6',
'ENSG00000064652' => 'sorting nexin 24',
'ENSG00000168938' => 'peptidylprolyl isomerase C (cyclophilin C)',
'ENSG00000223652' => null,
'ENSG00000249996' => null,
'ENSG00000263432' => 'RNA, 7SL, cytoplasmic 689, pseudogene',
'ENSG00000276047' => 'Metazoan signal recognition particle RNA',
'ENSMUSG00000024535' => 'sorting nexing 24',
'ENSMUSG00000024538' => 'peptidylprolyl isomerase C',
'ENSMUSG00000069378' => 'PR domain containing 6'
)
$gene_name_arr = array(
'ENSG00000061455' => 'PRDM6',
'ENSG00000064652' => 'SNX24',
'ENSG00000168938' => 'PPIC',
'ENSG00000223652' => 'AC106786.1',
'ENSG00000249996' => 'RP11-359P5.1',
'ENSG00000263432' => 'RN7SL689P',
'ENSG00000276047' => 'Metazoa_SRP',
'ENSMUSG00000024535' => 'Snx24',
'ENSMUSG00000024538' => 'Ppic',
'ENSMUSG00000069378' => 'Prdm6'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007LD_0001',
'tax_id' => '9606',
'chromosome' => '5',
'seq_start' => '122918992',
'seq_end' => '123140193',
'region_length' => '221201',
'region_type' => 'UCNEbase',
'el_id' => 'PPIC'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007LD_0002',
'tax_id' => '9606',
'chromosome' => '5',
'seq_start' => '123140194',
'seq_end' => '123171822',
'region_length' => '31628',
'region_type' => 'UCNEbase',
'el_id' => 'PPIC'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007LD_0003',
'tax_id' => '10090',
'chromosome' => '18',
'seq_start' => '53312823',
'seq_end' => '53553068',
'region_length' => '240245',
'region_type' => 'UCNEbase',
'el_id' => 'PPIC'
)
),
(int) 3 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007LD_0004',
'tax_id' => '7955',
'chromosome' => '8',
'seq_start' => '164206',
'seq_end' => '164484',
'region_length' => '278',
'region_type' => 'UCNEbase',
'el_id' => 'PPIC'
)
),
(int) 4 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007LD_0005',
'tax_id' => '7955',
'chromosome' => 'Zv9_NA783',
'seq_start' => '49172',
'seq_end' => '49405',
'region_length' => '233',
'region_type' => 'UCNEbase',
'el_id' => 'PPIC'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 8 => 'Adrenal',
(int) 15 => 'Bladder',
(int) 24 => 'Brain',
(int) 36 => 'Breast',
(int) 46 => 'Colon',
(int) 56 => 'Heart',
(int) 69 => 'Kidney',
(int) 80 => 'Liver',
(int) 94 => 'Lung',
(int) 104 => 'Muscle',
(int) 117 => 'Ovary',
(int) 128 => 'Placenta',
(int) 139 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 30
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000407847' => array(
'start' => '123089121',
'end' => '123194266',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PRDM6-001'
),
'ENST00000427739' => array(
'start' => '123173401',
'end' => '123180319',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'PRDM6-004'
),
'ENST00000434521' => array(
'start' => '123099745',
'end' => '123180285',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'PRDM6-003'
),
'ENST00000464424' => array(
'start' => '123099746',
'end' => '123170935',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'PRDM6-002'
),
'ENST00000261369' => array(
'start' => '122845449',
'end' => '123009212',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SNX24-001'
),
'ENST00000395451' => array(
'start' => '122845605',
'end' => '123008161',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SNX24-002'
),
'ENST00000502387' => array(
'start' => '122936733',
'end' => '123029354',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SNX24-010'
),
'ENST00000503149' => array(
'start' => '122936734',
'end' => '123007774',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SNX24-009'
),
'ENST00000506996' => array(
'start' => '122845626',
'end' => '123002142',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SNX24-004'
),
'ENST00000507364' => array(
'start' => '122948596',
'end' => '123002145',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SNX24-012'
),
'ENST00000510914' => array(
'start' => '122946055',
'end' => '123029350',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SNX24-011'
),
'ENST00000511211' => array(
'start' => '122844232',
'end' => '122999984',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SNX24-006'
),
'ENST00000511545' => array(
'start' => '122845663',
'end' => '123007782',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SNX24-008'
),
'ENST00000513613' => array(
'start' => '122843439',
'end' => '122998314',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SNX24-007'
),
'ENST00000513881' => array(
'start' => '122845518',
'end' => '123008610',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SNX24-003'
),
'ENST00000515729' => array(
'start' => '122998269',
'end' => '123002142',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SNX24-013'
),
'ENST00000306442' => array(
'start' => '123023250',
'end' => '123036741',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PPIC-001'
),
'ENST00000415659' => array(
'start' => '123028493',
'end' => '123036725',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'PPIC-002'
),
'ENST00000442777' => array(
'start' => '123087248',
'end' => '123089295',
'transcript_biotype' => 'antisense',
'transcript_name' => 'AC106786.1-002'
),
'ENST00000458103' => array(
'start' => '123087634',
'end' => '123090299',
'transcript_biotype' => 'antisense',
'transcript_name' => 'AC106786.1-001'
),
'ENST00000506859' => array(
'start' => '123036271',
'end' => '123054667',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-359P5.1-001'
),
'ENST00000577215' => array(
'start' => '123022487',
'end' => '123022783',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'RN7SL689P-201'
),
'ENST00000579731' => array(
'start' => '123070782',
'end' => '123071080',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Metazoa_SRP.1-351'
),
'ENSMUST00000025417' => array(
'start' => '53245769',
'end' => '53390823',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Snx24-201'
),
'ENSMUST00000165032' => array(
'start' => '53245662',
'end' => '53390823',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Snx24-202'
),
'ENSMUST00000025419' => array(
'start' => '53406341',
'end' => '53418007',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ppic-201'
),
'ENSMUST00000091900' => array(
'start' => '53464546',
'end' => '53575857',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Prdm6-201'
),
'ENSMUST00000115398' => array(
'start' => '53551594',
'end' => '53575857',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Prdm6-003'
),
'ENSMUST00000115399' => array(
'start' => '53472981',
'end' => '53575907',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Prdm6-002'
),
'ENSMUST00000154557' => array(
'start' => '53465051',
'end' => '53575857',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Prdm6-001'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007LD_0001' => array(
'genes_in_region' => array(
'ENSG00000061455' => array(
[maximum depth reached]
),
'ENSG00000064652' => array(
[maximum depth reached]
),
'ENSG00000168938' => array(
[maximum depth reached]
),
'ENSG00000263432' => array(
[maximum depth reached]
),
'ENSG00000276047' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adrenal',
(int) 1 => 'Brain',
(int) 2 => 'Breast',
(int) 3 => 'Colon',
(int) 4 => 'Heart',
(int) 5 => 'Kidney',
(int) 6 => 'Liver',
(int) 7 => 'Lung',
(int) 8 => 'Muscle',
(int) 9 => 'Ovary',
(int) 10 => 'Placenta',
(int) 11 => 'Testis',
(int) 12 => 'Brain',
(int) 13 => 'Heart',
(int) 14 => 'Liver',
(int) 15 => 'Lung',
(int) 16 => 'Muscle',
(int) 17 => 'Adipose',
(int) 18 => 'Bladder',
(int) 19 => 'Muscle',
(int) 20 => 'Bladder',
(int) 21 => 'Brain',
(int) 22 => 'Breast',
(int) 23 => 'Colon',
(int) 24 => 'Heart',
(int) 25 => 'Kidney',
(int) 26 => 'Liver',
(int) 27 => 'Lung',
(int) 28 => 'Muscle',
(int) 29 => 'Ovary',
(int) 30 => 'Placenta',
(int) 31 => 'Testis',
(int) 32 => 'Kidney',
(int) 33 => 'Bladder',
(int) 34 => 'Brain',
(int) 35 => 'Breast',
(int) 36 => 'Heart',
(int) 37 => 'Liver',
(int) 38 => 'Muscle',
(int) 39 => 'Testis',
(int) 40 => 'Colon',
(int) 41 => 'Adipose',
(int) 42 => 'Adrenal',
(int) 43 => 'Bladder',
(int) 44 => 'Brain',
(int) 45 => 'Breast',
(int) 46 => 'Colon',
(int) 47 => 'Heart',
(int) 48 => 'Kidney',
(int) 49 => 'Liver',
(int) 50 => 'Lung',
(int) 51 => 'Muscle',
(int) 52 => 'Ovary',
(int) 53 => 'Placenta',
(int) 54 => 'Testis',
(int) 55 => 'Muscle',
(int) 56 => 'Liver',
(int) 57 => 'Brain',
(int) 58 => 'Colon',
(int) 59 => 'Heart',
(int) 60 => 'Kidney',
(int) 61 => 'Liver',
(int) 62 => 'Lung',
(int) 63 => 'Muscle',
(int) 64 => 'Ovary',
(int) 65 => 'Placenta',
(int) 66 => 'Testis',
(int) 67 => 'Adipose',
(int) 68 => 'Adrenal',
(int) 69 => 'Brain',
(int) 70 => 'Breast',
(int) 71 => 'Colon',
(int) 72 => 'Heart',
(int) 73 => 'Kidney',
(int) 74 => 'Liver',
(int) 75 => 'Lung',
(int) 76 => 'Ovary',
(int) 77 => 'Testis'
)
),
'CIL_0007LD_0003' => array(
'genes_in_region' => array(
'ENSMUSG00000024535' => array(
[maximum depth reached]
),
'ENSMUSG00000024538' => array(
[maximum depth reached]
),
'ENSMUSG00000069378' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Heart',
(int) 1 => 'Liver',
(int) 2 => 'Muscle',
(int) 3 => 'Placenta',
(int) 4 => 'Testis',
(int) 5 => 'Adipose',
(int) 6 => 'Adrenal',
(int) 7 => 'Bladder',
(int) 8 => 'Brain',
(int) 9 => 'Breast',
(int) 10 => 'Colon',
(int) 11 => 'Heart',
(int) 12 => 'Kidney',
(int) 13 => 'Liver',
(int) 14 => 'Lung',
(int) 15 => 'Muscle',
(int) 16 => 'Ovary',
(int) 17 => 'Placenta',
(int) 18 => 'Testis',
(int) 19 => 'Adipose',
(int) 20 => 'Adrenal',
(int) 21 => 'Bladder',
(int) 22 => 'Brain',
(int) 23 => 'Breast',
(int) 24 => 'Colon',
(int) 25 => 'Heart',
(int) 26 => 'Kidney',
(int) 27 => 'Liver',
(int) 28 => 'Lung',
(int) 29 => 'Muscle',
(int) 30 => 'Ovary',
(int) 31 => 'Placenta',
(int) 32 => 'Testis',
(int) 33 => 'Adipose',
(int) 34 => 'Adrenal',
(int) 35 => 'Bladder',
(int) 36 => 'Brain',
(int) 37 => 'Breast',
(int) 38 => 'Colon',
(int) 39 => 'Heart',
(int) 40 => 'Kidney',
(int) 41 => 'Liver',
(int) 42 => 'Lung',
(int) 43 => 'Ovary',
(int) 44 => 'Placenta',
(int) 45 => 'Testis',
(int) 46 => 'Adipose',
(int) 47 => 'Adrenal',
(int) 48 => 'Bladder',
(int) 49 => 'Brain',
(int) 50 => 'Breast',
(int) 51 => 'Heart',
(int) 52 => 'Kidney',
(int) 53 => 'Liver',
(int) 54 => 'Lung',
(int) 55 => 'Muscle',
(int) 56 => 'Ovary',
(int) 57 => 'Placenta',
(int) 58 => 'Testis',
(int) 59 => 'Muscle',
(int) 60 => 'Ovary',
(int) 61 => 'Placenta',
(int) 62 => 'Adipose',
(int) 63 => 'Bladder',
(int) 64 => 'Brain',
(int) 65 => 'Breast',
(int) 66 => 'Colon',
(int) 67 => 'Heart',
(int) 68 => 'Kidney',
(int) 69 => 'Liver',
(int) 70 => 'Ovary',
(int) 71 => 'Placenta',
(int) 72 => 'Testis'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007LD_0005',
'tax_id' => '7955',
'chromosome' => 'Zv9_NA783',
'seq_start' => '49172',
'seq_end' => '49405',
'region_length' => '233',
'region_type' => 'UCNEbase',
'el_id' => 'PPIC'
)
)
$gene_el = array(
'ENSMUST00000091900' => array(
'Adipose' => array(
'average_FPKM' => '0.107',
'stddev_FPKM' => '0.01'
),
'Adrenal' => array(
'average_FPKM' => '0.160',
'stddev_FPKM' => '0.04'
),
'Bladder' => array(
'average_FPKM' => '3.327',
'stddev_FPKM' => '0.42'
),
'Brain' => array(
'average_FPKM' => '0.261',
'stddev_FPKM' => '0.21'
),
'Breast' => array(
'average_FPKM' => '1.299',
'stddev_FPKM' => '0.41'
),
'Colon' => array(
'average_FPKM' => '1.264',
'stddev_FPKM' => '0.26'
),
'Heart' => array(
'average_FPKM' => '0.338',
'stddev_FPKM' => '0.04'
),
'Kidney' => array(
'average_FPKM' => '0.117',
'stddev_FPKM' => '0.06'
),
'Liver' => array(
'average_FPKM' => '0.073',
'stddev_FPKM' => '0.05'
),
'Lung' => array(
'average_FPKM' => '4.133',
'stddev_FPKM' => '2.32'
),
'Ovary' => array(
'average_FPKM' => '2.796',
'stddev_FPKM' => '1.22'
),
'Placenta' => array(
'average_FPKM' => '0.966',
'stddev_FPKM' => '0.46'
),
'Testis' => array(
'average_FPKM' => '0.043',
'stddev_FPKM' => '0.00'
)
),
'ENSMUST00000115398' => array(
'Adipose' => array(
'average_FPKM' => '0.083',
'stddev_FPKM' => '0.00'
),
'Adrenal' => array(
'average_FPKM' => '0.107',
'stddev_FPKM' => '0.02'
),
'Bladder' => array(
'average_FPKM' => '9.911',
'stddev_FPKM' => '0.00'
),
'Brain' => array(
'average_FPKM' => '0.038',
'stddev_FPKM' => '0.00'
),
'Breast' => array(
'average_FPKM' => '0.761',
'stddev_FPKM' => '0.00'
),
'Heart' => array(
'average_FPKM' => '0.174',
'stddev_FPKM' => '0.00'
),
'Kidney' => array(
'average_FPKM' => '0.066',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '0.064',
'stddev_FPKM' => '0.04'
),
'Lung' => array(
'average_FPKM' => '5.454',
'stddev_FPKM' => '0.15'
),
'Muscle' => array(
'average_FPKM' => '0.043',
'stddev_FPKM' => '0.02'
),
'Ovary' => array(
'average_FPKM' => '1.249',
'stddev_FPKM' => '0.74'
),
'Placenta' => array(
'average_FPKM' => '0.920',
'stddev_FPKM' => '0.22'
),
'Testis' => array(
'average_FPKM' => '0.290',
'stddev_FPKM' => '0.12'
)
),
'ENSMUST00000115399' => array(
'Muscle' => array(
'average_FPKM' => '0.023',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.683',
'stddev_FPKM' => '0.37'
),
'Placenta' => array(
'average_FPKM' => '0.257',
'stddev_FPKM' => '0.00'
)
),
'ENSMUST00000154557' => array(
'Adipose' => array(
'average_FPKM' => '0.068',
'stddev_FPKM' => '0.01'
),
'Bladder' => array(
'average_FPKM' => '3.789',
'stddev_FPKM' => '0.00'
),
'Brain' => array(
'average_FPKM' => '0.375',
'stddev_FPKM' => '0.00'
),
'Breast' => array(
'average_FPKM' => '0.415',
'stddev_FPKM' => '0.00'
),
'Colon' => array(
'average_FPKM' => '0.380',
'stddev_FPKM' => '0.00'
),
'Heart' => array(
'average_FPKM' => '0.196',
'stddev_FPKM' => '0.02'
),
'Kidney' => array(
'average_FPKM' => '0.014',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '0.071',
'stddev_FPKM' => '0.02'
),
'Ovary' => array(
'average_FPKM' => '0.825',
'stddev_FPKM' => '0.40'
),
'Placenta' => array(
'average_FPKM' => '0.583',
'stddev_FPKM' => '0.29'
),
'Testis' => array(
'average_FPKM' => '0.107',
'stddev_FPKM' => '0.01'
)
)
)
$gene_key = 'ENSMUSG00000069378'
$is_first = false
$tran_el = array(
'Adipose' => array(
'average_FPKM' => '0.068',
'stddev_FPKM' => '0.01'
),
'Bladder' => array(
'average_FPKM' => '3.789',
'stddev_FPKM' => '0.00'
),
'Brain' => array(
'average_FPKM' => '0.375',
'stddev_FPKM' => '0.00'
),
'Breast' => array(
'average_FPKM' => '0.415',
'stddev_FPKM' => '0.00'
),
'Colon' => array(
'average_FPKM' => '0.380',
'stddev_FPKM' => '0.00'
),
'Heart' => array(
'average_FPKM' => '0.196',
'stddev_FPKM' => '0.02'
),
'Kidney' => array(
'average_FPKM' => '0.014',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '0.071',
'stddev_FPKM' => '0.02'
),
'Ovary' => array(
'average_FPKM' => '0.825',
'stddev_FPKM' => '0.40'
),
'Placenta' => array(
'average_FPKM' => '0.583',
'stddev_FPKM' => '0.29'
),
'Testis' => array(
'average_FPKM' => '0.107',
'stddev_FPKM' => '0.01'
)
)
$tran_key = 'ENSMUST00000154557'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
(PRDM6)