C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PR domain containing 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000407847 PRDM6-001 ENSG00000061455 9606 + 5:123089121-123194266 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000407847
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000407847 0.148±0.00 0.060±0.04 0.221±0.00 1.972±0.00 0.051±0.00 0.041±0.04 1.053±1.05 1.053±0.30 0.009±0.00 0.537±0.35 0.859±0.08 0.431±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007LD CIL_0007LD_0001 UCNEbase 5:122918992-123140193
CIL_0004AY CIL_0004AY_0001 CGP 5:123023250-123194266
CIL_0004AX CIL_0004AX_0001 CGP 5:123089121-123423592

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0018024 IEA histone-lysine N-methyltransferase activity
GO:0022008 IEA neurogenesis
GO:0034968 IEA histone lysine methylation
GO:0042803 IEA protein homodimerization activity
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding
GO:0051151 IEA negative regulation of smooth muscle cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000091900 Prdm6-201 protein_coding Mus_musculus 0 2656
ENSMUST00000154557 Prdm6-001 protein_coding Mus_musculus 0 2250
ENSMUST00000115399 Prdm6-002 protein_coding Mus_musculus 0 2087
ENSMUST00000115398 Prdm6-003 protein_coding Mus_musculus 0 1291

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