C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ring finger protein 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000029110 Rnf4 10090 + 5:34336289-34355629 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000030992 Rnf4-001 34336380-34353436 protein_coding
  ENSMUST00000181991 Rnf4-011 34336418-34350033 processed_transcript
  ENSMUST00000181999 Rnf4-008 34336417-34347134 retained_intron
  ENSMUST00000182047 Rnf4-006 34336932-34353424 protein_coding
  ENSMUST00000182582 Rnf4-010 34336419-34342628 processed_transcript
  ENSMUST00000182583 Rnf4-005 34336685-34350030 protein_coding
  ENSMUST00000182709 Rnf4-002 34336289-34353436 protein_coding
  ENSMUST00000182772 Rnf4-007 34336424-34347426 retained_intron
  ENSMUST00000182810 Rnf4-009 34337319-34342664 processed_transcript
  ENSMUST00000182970 Rnf4-004 34336328-34350527 retained_intron
  ENSMUST00000183071 Rnf4-012 34336446-34349868 retained_intron
  ENSMUST00000183265 Rnf4-003 34351116-34355629 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030992ENSMUST00000181991ENSMUST00000182047ENSMUST00000182583ENSMUST00000182709
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030992 38.531±3.90 6.026±0.00 21.933±4.36 23.141±13.55 37.975±16.69 10.688±3.01 7.178±2.67 11.528±3.57 16.084±9.24 16.056±2.41 2.023±1.14 30.973±11.75 33.079±16.78 N/A
ENSMUST00000181991 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 75.131±0.00 N/A 348.153±0.00
ENSMUST00000182047 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 26.508±17.76
ENSMUST00000182583 N/A N/A N/A 77.199±0.00 N/A N/A N/A N/A N/A N/A N/A 115.839±0.00 388.866±91.55 272.294±0.00
ENSMUST00000182709 17.110±3.98 28.220±3.65 21.385±3.89 11.307±5.78 12.994±5.69 23.076±8.11 5.429±2.93 13.695±3.51 22.272±4.29 17.410±2.48 3.237±1.34 32.928±12.80 27.820±10.92 13.014±4.70

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00057G CIL_00057G_0002 CGP 5:34336289-34486456

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 ISS DNA binding
GO:0004842 ISS ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005634 IDA:ISS nucleus
GO:0005737 IDA:ISS cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0008134 IPI transcription factor binding
GO:0008270 IEA zinc ion binding
GO:0016605 IEA PML body
GO:0016874 IEA ligase activity
GO:0031491 ISS nucleosome binding
GO:0032184 ISS SUMO polymer binding
GO:0043161 ISS proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0045893 ISS positive regulation of transcription, DNA-templated
GO:0045944 IDA:ISS positive regulation of transcription from RNA polymerase II promoter
GO:0046685 IEA response to arsenic-containing substance
GO:0051865 ISS protein autoubiquitination
GO:0070534 ISS protein K63-linked ubiquitination
GO:0070936 ISS protein K48-linked ubiquitination
GO:0070979 ISS protein K11-linked ubiquitination
GO:0085020 ISS protein K6-linked ubiquitination
GO:0090169 ISS regulation of spindle assembly
GO:0090234 ISS regulation of kinetochore assembly

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000090993 RNF4 ring finger protein 4 protein_coding Danio_rerio
ENSG00000063978 RNF4 ring finger protein 4 protein_coding Homo_sapiens

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