C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: LIM and calponin homology domains 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000064042 LIMCH1 9606 + 4:41359607-41700044 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000313860 LIMCH1-001 41360787-41700044 protein_coding
  ENST00000381753 LIMCH1-018 41612902-41700044 protein_coding
  ENST00000396595 LIMCH1-017 41612902-41700043 protein_coding
  ENST00000446625 LIMCH1-010 41385979-41619362 protein_coding
  ENST00000503057 LIMCH1-013 41538157-41697814 protein_coding
  ENST00000505705 LIMCH1-025 41693196-41698479 processed_transcript
  ENST00000508466 LIMCH1-019 41613476-41697483 protein_coding
  ENST00000508501 LIMCH1-002 41360785-41699012 protein_coding
  ENST00000509277 LIMCH1-015 41612709-41697542 protein_coding
  ENST00000509454 LIMCH1-016 41612902-41620294 protein_coding
  ENST00000509638 LIMCH1-004 41360631-41619936 protein_coding
  ENST00000511424 LIMCH1-026 41385803-41613534 protein_coding
  ENST00000511496 LIMCH1-012 41538174-41697544 protein_coding
  ENST00000512228 LIMCH1-023 41360807-41599121 processed_transcript
  ENST00000512632 LIMCH1-006 41360807-41699000 protein_coding
  ENST00000512820 LIMCH1-007 41360815-41699020 protein_coding
  ENST00000512946 LIMCH1-005 41360785-41699012 protein_coding
  ENST00000513024 LIMCH1-003 41359607-41699003 protein_coding
  ENST00000514096 LIMCH1-014 41612339-41697814 protein_coding
  ENST00000514190 LIMCH1-024 41360809-41613557 processed_transcript
  ENST00000515785 LIMCH1-021 41692955-41697895 processed_transcript
  ENST00000515847 LIMCH1-022 41418739-41598948 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000313860ENST00000381753ENST00000396595ENST00000503057ENST00000508466ENST00000508501ENST00000509638ENST00000511496ENST00000512820ENST00000512946ENST00000513024
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000313860 N/A N/A N/A 13.208±0.00 4.151±0.00 N/A 14.525±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000381753 N/A N/A N/A N/A 2.913±1.88 0.769±0.00 N/A 4.413±0.00 N/A N/A N/A 0.761±0.24 1.021±0.00 N/A
ENST00000396595 N/A 2.233±0.00 N/A 5.119±0.00 3.758±1.88 1.979±0.99 N/A N/A 4.122±0.00 21.333±0.00 N/A 2.755±0.07 1.340±0.51 N/A
ENST00000503057 N/A N/A 0.960±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508466 4.485±0.00 N/A N/A N/A N/A N/A 18.325±0.00 N/A N/A N/A 9.085±0.00 1.186±0.00 3.352±0.00 4.452±1.12
ENST00000508501 3.813±0.00 1.392±0.00 1.515±0.00 11.176±0.00 2.827±1.25 1.044±0.00 5.463±2.98 N/A 3.094±2.58 N/A 2.991±0.31 1.992±0.00 1.646±0.59 1.604±0.29
ENST00000509638 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.557±0.00 N/A N/A
ENST00000511496 N/A N/A N/A N/A 1.403±0.00 N/A 3.898±0.00 N/A 0.547±0.00 11.058±0.00 N/A N/A N/A N/A
ENST00000512820 N/A N/A 1.673±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 1.302±0.08 1.323±0.00 1.475±0.00
ENST00000512946 N/A N/A N/A N/A N/A 1.149±0.00 N/A N/A N/A N/A N/A 0.584±0.00 N/A N/A
ENST00000513024 N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.676±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00038J CIL_00038J_0001 CGP 4:41256413-41700044
CIL_00028N CIL_00028N_0002 CGP 4:41359607-41748970

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005515 IEA protein binding
GO:0008270 IEA zinc ion binding
GO:0031032 IEA actomyosin structure organization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000079060 limch1b LIM and calponin homology domains 1b protein_coding Danio_rerio
ENSMUSG00000037736 Limch1 LIM and calponin homology domains 1 protein_coding Mus_musculus

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