C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00028N_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000079060-ENSDARG00000079060 CGP 7955 14:14496213-14857579
GeneTranscriptPositionBiotype
ENSDARG00000071751 (phox2bb)
paired-like homeobox 2bb 		ENSDART00000080682 (phox2bb-001) 14824702-14827831 protein_coding
ENSDARG00000076003 (TCIRG1 (2 of 2))
T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 subunit A3 		ENSDART00000106347 (TCIRG1 (2 of 2)-201) 14460112-14489595 protein_coding
ENSDART00000115174 (TCIRG1 (2 of 2)-202) 14460112-14576295 protein_coding
ENSDART00000143802 (TCIRG1 (2 of 2)-003) 14487737-14492798 protein_coding
ENSDART00000150638 (TCIRG1 (2 of 2)-001) 14460110-14492886 protein_coding
ENSDART00000150795 (TCIRG1 (2 of 2)-002) 14487439-14492872 retained_intron
ENSDARG00000079060 (limch1b)
LIM and calponin homology domains 1b 		ENSDART00000110570 (limch1b-201) 14496213-14857579 protein_coding
ENSDART00000126283 (limch1b-202) 14661744-14784220 protein_coding
CIL_00028N_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000064042-ENSG00000109132 CGP 9606 4:41359607-41748970
GeneTranscriptPositionBiotype
ENSG00000064042 (LIMCH1)
LIM and calponin homology domains 1 		ENST00000313860 (LIMCH1-001) 41360787-41700044 protein_coding
ENST00000381753 (LIMCH1-018) 41612902-41700044 protein_coding
ENST00000396595 (LIMCH1-017) 41612902-41700043 protein_coding
ENST00000446625 (LIMCH1-010) 41385979-41619362 protein_coding
ENST00000503057 (LIMCH1-013) 41538157-41697814 protein_coding
ENST00000505705 (LIMCH1-025) 41693196-41698479 processed_transcript
ENST00000508466 (LIMCH1-019) 41613476-41697483 protein_coding
ENST00000508501 (LIMCH1-002) 41360785-41699012 protein_coding
ENST00000509277 (LIMCH1-015) 41612709-41697542 protein_coding
ENST00000509454 (LIMCH1-016) 41612902-41620294 protein_coding
ENST00000509638 (LIMCH1-004) 41360631-41619936 protein_coding
ENST00000511424 (LIMCH1-026) 41385803-41613534 protein_coding
ENST00000511496 (LIMCH1-012) 41538174-41697544 protein_coding
ENST00000512228 (LIMCH1-023) 41360807-41599121 processed_transcript
ENST00000512632 (LIMCH1-006) 41360807-41699000 protein_coding
ENST00000512820 (LIMCH1-007) 41360815-41699020 protein_coding
ENST00000512946 (LIMCH1-005) 41360785-41699012 protein_coding
ENST00000513024 (LIMCH1-003) 41359607-41699003 protein_coding
ENST00000514096 (LIMCH1-014) 41612339-41697814 protein_coding
ENST00000514190 (LIMCH1-024) 41360809-41613557 processed_transcript
ENST00000515785 (LIMCH1-021) 41692955-41697895 processed_transcript
ENST00000515847 (LIMCH1-022) 41418739-41598948 processed_transcript
ENSG00000109132 (PHOX2B)
paired-like homeobox 2b 		ENST00000226382 (PHOX2B-001) 41744082-41748970 protein_coding
ENST00000510424 (PHOX2B-002) 41746033-41747709 processed_transcript
ENSG00000239627 (RP11-124A7.1)
 ENST00000475538 (RP11-124A7.1-001) 41389115-41389593 processed_pseudogene
ENSG00000249081 (OR5M14P)
olfactory receptor, family 5, subfamily M, member 14 pseudogene 		ENST00000506803 (OR5M14P-001) 41722538-41723512 unprocessed_pseudogene
ENSG00000249216 (RP11-227F19.5)
 ENST00000506475 (RP11-227F19.5-001) 41688858-41692797 antisense
ENSG00000250467 (RP11-227F19.1)
 ENST00000508038 (RP11-227F19.1-001) 41748293-41824119 antisense
CIL_00028N_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000037736-ENSMUSG00000012520 CGP 10090 5:66745835-67099301
GeneTranscriptPositionBiotype
ENSMUSG00000012520 (Phox2b)
paired-like homeobox 2b 		ENSMUST00000012664 (Phox2b-001) 67094405-67099301 protein_coding
ENSMUST00000174251 (Phox2b-002) 67097044-67099057 protein_coding
ENSMUSG00000037736 (Limch1)
LIM and calponin homology domains 1 		ENSMUST00000038188 (Limch1-001) 66968416-67057159 protein_coding
ENSMUST00000101164 (Limch1-004) 66745835-67056073 protein_coding
ENSMUST00000117601 (Limch1-015) 66745878-67056073 protein_coding
ENSMUST00000118242 (Limch1-013) 66745835-67056073 protein_coding
ENSMUST00000119854 (Limch1-014) 66745851-67056072 protein_coding
ENSMUST00000122812 (Limch1-006) 66898431-66969153 processed_transcript
ENSMUST00000127184 (Limch1-007) 66968577-66998765 protein_coding
ENSMUST00000130228 (Limch1-005) 66745889-66953678 nonsense_mediated_decay
ENSMUST00000132991 (Limch1-008) 66968961-66998686 protein_coding
ENSMUST00000135334 (Limch1-011) 67043849-67054558 processed_transcript
ENSMUST00000137394 (Limch1-010) 66997092-66999346 retained_intron
ENSMUST00000140428 (Limch1-002) 66968566-67030853 retained_intron
ENSMUST00000147050 (Limch1-009) 66977018-66999241 processed_transcript
ENSMUST00000153174 (Limch1-012) 67044401-67054641 nonsense_mediated_decay
ENSMUSG00000082420 (Gm6517)
predicted gene 6517 		ENSMUST00000121056 (Gm6517-001) 66890364-66890884 processed_pseudogene
ENSMUSG00000086964 (Gm15948)
predicted gene 15948 		ENSMUST00000150616 (Gm15948-001) 66988816-66991207 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00028N_0001ENSDARG00000071751ENSDART00000080682ENSDARG00000076003ENSDART00000106347ENSDART00000115174ENSDART00000143802ENSDART00000150638ENSDART00000150795ENSDARG00000079060ENSDART00000110570ENSDART00000126283CIL_00028N_0002ENSG00000064042ENST00000313860ENST00000381753ENST00000396595ENST00000446625ENST00000503057ENST00000505705ENST00000508466ENST00000508501ENST00000509277ENST00000509454ENST00000509638ENST00000511424ENST00000511496ENST00000512228ENST00000512632ENST00000512820ENST00000512946ENST00000513024ENST00000514096ENST00000514190ENST00000515785ENST00000515847ENSG00000109132ENST00000226382ENST00000510424ENSG00000239627ENST00000475538ENSG00000249081ENST00000506803ENSG00000249216ENST00000506475ENSG00000250467ENST00000508038CIL_00028N_0003ENSMUSG00000012520ENSMUST00000012664ENSMUST00000174251ENSMUSG00000037736ENSMUST00000038188ENSMUST00000101164ENSMUST00000117601ENSMUST00000118242ENSMUST00000119854ENSMUST00000122812ENSMUST00000127184ENSMUST00000130228ENSMUST00000132991ENSMUST00000135334ENSMUST00000137394ENSMUST00000140428ENSMUST00000147050ENSMUST00000153174ENSMUSG00000082420ENSMUST00000121056ENSMUSG00000086964ENSMUST00000150616
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00028N_0001ENSDARG00000071751ENSDART00000080682ENSDARG00000076003ENSDART00000106347ENSDART00000115174ENSDART00000143802ENSDART00000150638ENSDART00000150795ENSDARG00000079060ENSDART00000110570ENSDART00000126283CIL_00028N_0002ENSG00000064042ENST00000313860ENST00000381753ENST00000396595ENST00000503057ENST00000508466ENST00000508501ENST00000509638ENST00000511496ENST00000512820ENST00000512946ENST00000513024ENSG00000109132ENST00000226382ENST00000510424ENSG00000239627ENST00000475538ENSG00000249081ENST00000506803ENSG00000249216ENST00000506475ENSG00000250467ENST00000508038CIL_00028N_0003ENSMUSG00000012520ENSMUST00000012664ENSMUST00000174251ENSMUSG00000037736ENSMUST00000038188ENSMUST00000101164ENSMUST00000117601ENSMUST00000118242ENSMUST00000137394ENSMUST00000140428ENSMUST00000147050ENSMUSG00000082420ENSMUST00000121056ENSMUSG00000086964ENSMUST00000150616
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000071751 ENSDART00000080682 N/A N/A N/A 0.081±0.05 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000076003 ENSDART00000106347 N/A N/A N/A N/A N/A N/A 0.466±0.00 0.676±0.00 0.017±0.00 N/A 0.025±0.00 N/A N/A N/A
ENSDART00000115174 N/A N/A N/A 0.161±0.02 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000143802 N/A N/A N/A 1.150±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000150638 N/A N/A N/A N/A N/A N/A 0.049±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000150795 N/A N/A N/A 0.150±0.00 N/A N/A 0.169±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000079060 ENSDART00000110570 N/A N/A N/A 2.407±0.10 N/A N/A 4.642±5.25 4.344±3.56 N/A N/A N/A N/A N/A N/A
ENSDART00000126283 N/A N/A N/A 0.681±0.05 N/A N/A 0.973±0.26 0.298±0.00 0.071±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000064042 ENST00000313860 N/A N/A N/A 13.208±0.00 4.151±0.00 N/A 14.525±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000381753 N/A N/A N/A N/A 2.913±1.88 0.769±0.00 N/A 4.413±0.00 N/A N/A N/A 0.761±0.24 1.021±0.00 N/A
ENST00000396595 N/A 2.233±0.00 N/A 5.119±0.00 3.758±1.88 1.979±0.99 N/A N/A 4.122±0.00 21.333±0.00 N/A 2.755±0.07 1.340±0.51 N/A
ENST00000446625 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000503057 N/A N/A 0.960±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000505705 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508466 4.485±0.00 N/A N/A N/A N/A N/A 18.325±0.00 N/A N/A N/A 9.085±0.00 1.186±0.00 3.352±0.00 4.452±1.12
ENST00000508501 3.813±0.00 1.392±0.00 1.515±0.00 11.176±0.00 2.827±1.25 1.044±0.00 5.463±2.98 N/A 3.094±2.58 N/A 2.991±0.31 1.992±0.00 1.646±0.59 1.604±0.29
ENST00000509277 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509454 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509638 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.557±0.00 N/A N/A
ENST00000511424 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511496 N/A N/A N/A N/A 1.403±0.00 N/A 3.898±0.00 N/A 0.547±0.00 11.058±0.00 N/A N/A N/A N/A
ENST00000512228 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512632 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512820 N/A N/A 1.673±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 1.302±0.08 1.323±0.00 1.475±0.00
ENST00000512946 N/A N/A N/A N/A N/A 1.149±0.00 N/A N/A N/A N/A N/A 0.584±0.00 N/A N/A
ENST00000513024 N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.676±0.00 N/A N/A N/A N/A
ENST00000514096 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000514190 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000515785 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000515847 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000109132 ENST00000226382 N/A 0.006±0.00 N/A N/A 0.137±0.00 0.597±0.00 N/A N/A N/A N/A N/A N/A N/A 0.029±0.00
ENST00000510424 N/A N/A N/A N/A N/A 0.944±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000239627 ENST00000475538 N/A 0.030±0.00 N/A 0.081±0.00 0.180±0.00 N/A 0.705±0.20 N/A N/A 0.893±0.00 N/A N/A N/A N/A
ENSG00000249081 ENST00000506803 N/A N/A N/A N/A N/A N/A 0.182±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000249216 ENST00000506475 0.062±0.00 N/A N/A 0.281±0.02 0.065±0.00 N/A 0.285±0.00 0.160±0.00 N/A 0.177±0.00 2.744±0.00 N/A N/A 0.895±0.00
ENSG00000250467 ENST00000508038 N/A N/A N/A N/A N/A 0.035±0.00 N/A N/A N/A N/A N/A N/A N/A 0.026±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000012520 ENSMUST00000012664 0.025±0.02 7.084±1.25 0.190±0.02 3.736±2.25 N/A 2.182±0.47 0.075±0.02 0.118±0.05 0.028±0.03 0.022±0.01 N/A N/A 0.027±0.00 0.011±0.00
ENSMUST00000174251 N/A 6.429±2.16 N/A N/A N/A 1.177±0.35 N/A N/A 0.011±0.01 0.019±0.00 N/A N/A N/A N/A
ENSMUSG00000037736 ENSMUST00000038188 N/A N/A 0.242±0.00 2.243±1.44 0.602±0.09 0.285±0.05 N/A 1.911±0.52 0.058±0.03 N/A N/A 0.915±0.00 0.168±0.00 N/A
ENSMUST00000101164 1.149±0.37 3.836±0.75 0.596±0.00 7.779±7.84 0.771±0.39 0.213±0.10 N/A 2.799±1.08 0.080±0.04 27.608±6.98 2.598±0.00 1.513±2.17 1.564±1.40 3.076±0.00
ENSMUST00000117601 0.894±0.27 1.774±0.00 N/A N/A 0.635±0.00 0.291±0.10 4.742±0.00 1.663±0.32 0.053±0.03 22.994±5.04 N/A 0.948±0.34 N/A N/A
ENSMUST00000118242 N/A N/A N/A 0.893±0.00 N/A N/A N/A 2.862±0.00 N/A N/A N/A N/A 1.336±0.89 N/A
ENSMUST00000119854 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000122812 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000127184 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000130228 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132991 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135334 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137394 N/A N/A N/A N/A N/A N/A N/A N/A 0.219±0.00 N/A N/A 4.249±0.00 N/A 6.763±0.00
ENSMUST00000140428 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.963±0.00
ENSMUST00000147050 N/A N/A N/A N/A N/A N/A N/A N/A 0.089±0.00 N/A N/A N/A N/A 20.244±18.81
ENSMUST00000153174 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000082420 ENSMUST00000121056 0.377±0.11 0.541±0.25 0.104±0.00 0.299±0.14 0.404±0.30 0.348±0.00 0.416±0.20 0.129±0.04 0.086±0.06 0.572±0.19 0.096±0.02 0.307±0.20 0.139±0.10 0.084±0.01
ENSMUSG00000086964 ENSMUST00000150616 N/A N/A N/A 0.198±0.14 N/A N/A 0.397±0.00 N/A N/A N/A 0.184±0.01 0.181±0.02 N/A N/A

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