C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LIM and calponin homology domains 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000508501 LIMCH1-002 ENSG00000064042 9606 + 4:41360785-41699012 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartLiverMuscleOvaryPlacentaTestisENST00000508501
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Liver Muscle Ovary Placenta Testis
ENST00000508501 3.813±0.00 1.392±0.00 1.515±0.00 11.176±0.00 2.827±1.25 1.044±0.00 5.463±2.98 3.094±2.58 2.991±0.31 1.992±0.00 1.646±0.59 1.604±0.29

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00038J CIL_00038J_0001 CGP 4:41256413-41700044
CIL_00028N CIL_00028N_0002 CGP 4:41359607-41748970

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005515 IEA protein binding
GO:0008270 IEA zinc ion binding
GO:0031032 IEA actomyosin structure organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000101164 Limch1-004 protein_coding Mus_musculus 0 3723
ENSMUST00000119854 Limch1-014 protein_coding Mus_musculus 0 3127
ENSMUST00000038188 Limch1-001 protein_coding Mus_musculus 0 3096
ENSMUST00000117601 Limch1-015 protein_coding Mus_musculus 0 2425
ENSMUST00000118242 Limch1-013 protein_coding Mus_musculus 0 1315
ENSMUST00000140428 Limch1-002 retained_intron Mus_musculus 0 1293
ENSMUST00000132991 Limch1-008 protein_coding Mus_musculus 0 881
ENSMUST00000137394 Limch1-010 retained_intron Mus_musculus 0 822
ENSMUST00000147050 Limch1-009 processed_transcript Mus_musculus 0 739
ENSMUST00000127184 Limch1-007 protein_coding Mus_musculus 0 568
ENSMUST00000122812 Limch1-006 processed_transcript Mus_musculus 0 401
ENSMUST00000130228 Limch1-005 nonsense_mediated_decay Mus_musculus 0 322

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