C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00038J_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000154277-ENSG00000064042 CGP 9606 4:41256413-41700044
GeneTranscriptPositionBiotype
ENSG00000064042 (LIMCH1)
LIM and calponin homology domains 1 		ENST00000313860 (LIMCH1-001) 41360787-41700044 protein_coding
ENST00000381753 (LIMCH1-018) 41612902-41700044 protein_coding
ENST00000396595 (LIMCH1-017) 41612902-41700043 protein_coding
ENST00000446625 (LIMCH1-010) 41385979-41619362 protein_coding
ENST00000503057 (LIMCH1-013) 41538157-41697814 protein_coding
ENST00000505705 (LIMCH1-025) 41693196-41698479 processed_transcript
ENST00000508466 (LIMCH1-019) 41613476-41697483 protein_coding
ENST00000508501 (LIMCH1-002) 41360785-41699012 protein_coding
ENST00000509277 (LIMCH1-015) 41612709-41697542 protein_coding
ENST00000509454 (LIMCH1-016) 41612902-41620294 protein_coding
ENST00000509638 (LIMCH1-004) 41360631-41619936 protein_coding
ENST00000511424 (LIMCH1-026) 41385803-41613534 protein_coding
ENST00000511496 (LIMCH1-012) 41538174-41697544 protein_coding
ENST00000512228 (LIMCH1-023) 41360807-41599121 processed_transcript
ENST00000512632 (LIMCH1-006) 41360807-41699000 protein_coding
ENST00000512820 (LIMCH1-007) 41360815-41699020 protein_coding
ENST00000512946 (LIMCH1-005) 41360785-41699012 protein_coding
ENST00000513024 (LIMCH1-003) 41359607-41699003 protein_coding
ENST00000514096 (LIMCH1-014) 41612339-41697814 protein_coding
ENST00000514190 (LIMCH1-024) 41360809-41613557 processed_transcript
ENST00000515785 (LIMCH1-021) 41692955-41697895 processed_transcript
ENST00000515847 (LIMCH1-022) 41418739-41598948 processed_transcript
ENSG00000154277 (UCHL1)
ubiquitin carboxyl-terminal esterase L1 (ubiquitin thiolesterase) 		ENST00000284440 (UCHL1-001) 41256833-41268429 protein_coding
ENST00000381760 (UCHL1-003) 41256908-41268428 retained_intron
ENST00000472501 (UCHL1-004) 41256946-41268427 retained_intron
ENST00000503431 (UCHL1-005) 41256769-41268256 protein_coding
ENST00000504818 (UCHL1-011) 41256933-41261923 processed_transcript
ENST00000505232 (UCHL1-010) 41256932-41268108 nonsense_mediated_decay
ENST00000508768 (UCHL1-009) 41256940-41268239 protein_coding
ENST00000510566 (UCHL1-008) 41261739-41264465 retained_intron
ENST00000512419 (UCHL1-002) 41256911-41268455 nonsense_mediated_decay
ENST00000512788 (UCHL1-012) 41256945-41268125 protein_coding
ENST00000514764 (UCHL1-006) 41260639-41268429 retained_intron
ENST00000514924 (UCHL1-007) 41256413-41257737 protein_coding
ENSG00000207481 (Y_RNA)
Y RNA 		ENST00000384750 (Y_RNA.1-772) 41303237-41303337 misc_RNA
ENSG00000239627 (RP11-124A7.1)
 ENST00000475538 (RP11-124A7.1-001) 41389115-41389593 processed_pseudogene
ENSG00000249216 (RP11-227F19.5)
 ENST00000506475 (RP11-227F19.5-001) 41688858-41692797 antisense
CIL_00038J_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000029223-ENSMUSG00000037736 CGP 10090 5:66676098-67057159
GeneTranscriptPositionBiotype
ENSMUSG00000029223 (Uchl1)
ubiquitin carboxy-terminal hydrolase L1 		ENSMUST00000031131 (Uchl1-001) 66676098-66687231 protein_coding
ENSMUST00000176015 (Uchl1-002) 66676893-66687229 retained_intron
ENSMUST00000177194 (Uchl1-003) 66676243-66676845 retained_intron
ENSMUSG00000037736 (Limch1)
LIM and calponin homology domains 1 		ENSMUST00000038188 (Limch1-001) 66968416-67057159 protein_coding
ENSMUST00000101164 (Limch1-004) 66745835-67056073 protein_coding
ENSMUST00000117601 (Limch1-015) 66745878-67056073 protein_coding
ENSMUST00000118242 (Limch1-013) 66745835-67056073 protein_coding
ENSMUST00000119854 (Limch1-014) 66745851-67056072 protein_coding
ENSMUST00000122812 (Limch1-006) 66898431-66969153 processed_transcript
ENSMUST00000127184 (Limch1-007) 66968577-66998765 protein_coding
ENSMUST00000130228 (Limch1-005) 66745889-66953678 nonsense_mediated_decay
ENSMUST00000132991 (Limch1-008) 66968961-66998686 protein_coding
ENSMUST00000135334 (Limch1-011) 67043849-67054558 processed_transcript
ENSMUST00000137394 (Limch1-010) 66997092-66999346 retained_intron
ENSMUST00000140428 (Limch1-002) 66968566-67030853 retained_intron
ENSMUST00000147050 (Limch1-009) 66977018-66999241 processed_transcript
ENSMUST00000153174 (Limch1-012) 67044401-67054641 nonsense_mediated_decay
ENSMUSG00000082420 (Gm6517)
predicted gene 6517 		ENSMUST00000121056 (Gm6517-001) 66890364-66890884 processed_pseudogene
ENSMUSG00000086964 (Gm15948)
predicted gene 15948 		ENSMUST00000150616 (Gm15948-001) 66988816-66991207 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00038J_0001ENSG00000064042ENST00000313860ENST00000381753ENST00000396595ENST00000503057ENST00000508466ENST00000508501ENST00000509638ENST00000511496ENST00000512820ENST00000512946ENST00000513024ENSG00000154277ENST00000284440ENST00000381760ENST00000472501ENST00000503431ENST00000504818ENST00000505232ENST00000508768ENST00000512419ENST00000514764ENSG00000207481ENST00000384750ENSG00000239627ENST00000475538ENSG00000249216ENST00000506475CIL_00038J_0002ENSMUSG00000029223ENSMUST00000031131ENSMUST00000176015ENSMUST00000177194ENSMUSG00000037736ENSMUST00000038188ENSMUST00000101164ENSMUST00000117601ENSMUST00000118242ENSMUST00000137394ENSMUST00000140428ENSMUST00000147050ENSMUSG00000082420ENSMUST00000121056ENSMUSG00000086964ENSMUST00000150616
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000064042 ENST00000313860 N/A N/A N/A 13.208±0.00 4.151±0.00 N/A 14.525±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000381753 N/A N/A N/A N/A 2.913±1.88 0.769±0.00 N/A 4.413±0.00 N/A N/A N/A 0.761±0.24 1.021±0.00 N/A
ENST00000396595 N/A 2.233±0.00 N/A 5.119±0.00 3.758±1.88 1.979±0.99 N/A N/A 4.122±0.00 21.333±0.00 N/A 2.755±0.07 1.340±0.51 N/A
ENST00000446625 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000503057 N/A N/A 0.960±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000505705 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508466 4.485±0.00 N/A N/A N/A N/A N/A 18.325±0.00 N/A N/A N/A 9.085±0.00 1.186±0.00 3.352±0.00 4.452±1.12
ENST00000508501 3.813±0.00 1.392±0.00 1.515±0.00 11.176±0.00 2.827±1.25 1.044±0.00 5.463±2.98 N/A 3.094±2.58 N/A 2.991±0.31 1.992±0.00 1.646±0.59 1.604±0.29
ENST00000509277 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509454 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509638 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.557±0.00 N/A N/A
ENST00000511424 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511496 N/A N/A N/A N/A 1.403±0.00 N/A 3.898±0.00 N/A 0.547±0.00 11.058±0.00 N/A N/A N/A N/A
ENST00000512228 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512632 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512820 N/A N/A 1.673±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 1.302±0.08 1.323±0.00 1.475±0.00
ENST00000512946 N/A N/A N/A N/A N/A 1.149±0.00 N/A N/A N/A N/A N/A 0.584±0.00 N/A N/A
ENST00000513024 N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.676±0.00 N/A N/A N/A N/A
ENST00000514096 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000514190 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000515785 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000515847 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000154277 ENST00000284440 1.240±0.00 N/A 1.422±0.00 139.140±0.00 8.522±5.79 N/A 0.116±0.00 N/A 0.735±0.57 N/A N/A 9.719±8.97 4.221±0.00 6.497±0.00
ENST00000381760 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.109±0.00
ENST00000472501 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.792±0.00 N/A N/A N/A N/A
ENST00000503431 6.903±0.00 3.345±0.00 0.461±0.00 226.074±177.75 53.510±0.00 14.916±11.79 1.926±0.00 55.728±0.00 N/A 3.017±0.00 1.716±0.00 4.259±4.44 3.231±1.57 10.469±4.42
ENST00000504818 N/A N/A N/A N/A N/A 1.160±0.00 N/A N/A 0.927±0.00 N/A N/A N/A N/A N/A
ENST00000505232 N/A N/A N/A N/A N/A 7.328±0.00 N/A N/A N/A N/A N/A 9.912±0.00 N/A N/A
ENST00000508768 N/A N/A 0.483±0.00 N/A N/A N/A N/A N/A 0.073±0.00 N/A N/A N/A N/A N/A
ENST00000510566 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512419 1.145±0.00 1.101±0.00 N/A N/A N/A N/A N/A N/A N/A 1.153±0.00 0.664±0.00 6.063±5.81 1.549±0.21 3.752±0.00
ENST00000512788 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000514764 2.239±0.00 1.370±0.00 N/A 195.254±0.00 29.482±0.00 16.367±0.00 3.954±0.00 27.006±0.00 0.191±0.00 4.525±0.00 1.633±0.99 23.767±8.81 5.362±2.32 8.386±0.00
ENST00000514924 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000207481 ENST00000384750 0.591±0.00 0.787±0.00 N/A N/A N/A N/A 0.342±0.00 N/A 0.329±0.00 N/A N/A 16.522±0.00 N/A 0.175±0.00
ENSG00000239627 ENST00000475538 N/A 0.030±0.00 N/A 0.081±0.00 0.180±0.00 N/A 0.705±0.20 N/A N/A 0.893±0.00 N/A N/A N/A N/A
ENSG00000249216 ENST00000506475 0.062±0.00 N/A N/A 0.281±0.02 0.065±0.00 N/A 0.285±0.00 0.160±0.00 N/A 0.177±0.00 2.744±0.00 N/A N/A 0.895±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029223 ENSMUST00000031131 3.570±0.82 49.621±20.93 178.322±41.54 303.441±67.87 1.467±0.55 16.086±3.11 3.497±1.24 5.780±1.35 0.979±0.22 2.153±0.68 2.095±0.88 55.690±32.60 2.433±1.27 20.368±7.99
ENSMUST00000176015 1.818±0.73 8.793±0.43 112.535±38.13 207.039±54.64 1.428±0.58 8.322±2.67 3.271±0.56 2.654±1.41 0.709±0.70 2.395±0.54 1.155±0.60 44.776±18.27 2.378±1.70 14.871±6.11
ENSMUST00000177194 N/A N/A N/A N/A 0.869±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 4.588±0.00
ENSMUSG00000037736 ENSMUST00000038188 N/A N/A 0.242±0.00 2.243±1.44 0.602±0.09 0.285±0.05 N/A 1.911±0.52 0.058±0.03 N/A N/A 0.915±0.00 0.168±0.00 N/A
ENSMUST00000101164 1.149±0.37 3.836±0.75 0.596±0.00 7.779±7.84 0.771±0.39 0.213±0.10 N/A 2.799±1.08 0.080±0.04 27.608±6.98 2.598±0.00 1.513±2.17 1.564±1.40 3.076±0.00
ENSMUST00000117601 0.894±0.27 1.774±0.00 N/A N/A 0.635±0.00 0.291±0.10 4.742±0.00 1.663±0.32 0.053±0.03 22.994±5.04 N/A 0.948±0.34 N/A N/A
ENSMUST00000118242 N/A N/A N/A 0.893±0.00 N/A N/A N/A 2.862±0.00 N/A N/A N/A N/A 1.336±0.89 N/A
ENSMUST00000119854 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000122812 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000127184 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000130228 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132991 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135334 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137394 N/A N/A N/A N/A N/A N/A N/A N/A 0.219±0.00 N/A N/A 4.249±0.00 N/A 6.763±0.00
ENSMUST00000140428 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.963±0.00
ENSMUST00000147050 N/A N/A N/A N/A N/A N/A N/A N/A 0.089±0.00 N/A N/A N/A N/A 20.244±18.81
ENSMUST00000153174 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000082420 ENSMUST00000121056 0.377±0.11 0.541±0.25 0.104±0.00 0.299±0.14 0.404±0.30 0.348±0.00 0.416±0.20 0.129±0.04 0.086±0.06 0.572±0.19 0.096±0.02 0.307±0.20 0.139±0.10 0.084±0.01
ENSMUSG00000086964 ENSMUST00000150616 N/A N/A N/A 0.198±0.14 N/A N/A 0.397±0.00 N/A N/A N/A 0.184±0.01 0.181±0.02 N/A N/A

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