C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: LIM and calponin homology domains 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000037736 Limch1 10090 + 5:66745835-67057159 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000038188 Limch1-001 66968416-67057159 protein_coding
  ENSMUST00000101164 Limch1-004 66745835-67056073 protein_coding
  ENSMUST00000117601 Limch1-015 66745878-67056073 protein_coding
  ENSMUST00000118242 Limch1-013 66745835-67056073 protein_coding
  ENSMUST00000119854 Limch1-014 66745851-67056072 protein_coding
  ENSMUST00000122812 Limch1-006 66898431-66969153 processed_transcript
  ENSMUST00000127184 Limch1-007 66968577-66998765 protein_coding
  ENSMUST00000130228 Limch1-005 66745889-66953678 nonsense_mediated_decay
  ENSMUST00000132991 Limch1-008 66968961-66998686 protein_coding
  ENSMUST00000135334 Limch1-011 67043849-67054558 processed_transcript
  ENSMUST00000137394 Limch1-010 66997092-66999346 retained_intron
  ENSMUST00000140428 Limch1-002 66968566-67030853 retained_intron
  ENSMUST00000147050 Limch1-009 66977018-66999241 processed_transcript
  ENSMUST00000153174 Limch1-012 67044401-67054641 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000038188ENSMUST00000101164ENSMUST00000117601ENSMUST00000118242ENSMUST00000137394ENSMUST00000140428ENSMUST00000147050
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000038188 N/A N/A 0.242±0.00 2.243±1.44 0.602±0.09 0.285±0.05 N/A 1.911±0.52 0.058±0.03 N/A N/A 0.915±0.00 0.168±0.00 N/A
ENSMUST00000101164 1.149±0.37 3.836±0.75 0.596±0.00 7.779±7.84 0.771±0.39 0.213±0.10 N/A 2.799±1.08 0.080±0.04 27.608±6.98 2.598±0.00 1.513±2.17 1.564±1.40 3.076±0.00
ENSMUST00000117601 0.894±0.27 1.774±0.00 N/A N/A 0.635±0.00 0.291±0.10 4.742±0.00 1.663±0.32 0.053±0.03 22.994±5.04 N/A 0.948±0.34 N/A N/A
ENSMUST00000118242 N/A N/A N/A 0.893±0.00 N/A N/A N/A 2.862±0.00 N/A N/A N/A N/A 1.336±0.89 N/A
ENSMUST00000137394 N/A N/A N/A N/A N/A N/A N/A N/A 0.219±0.00 N/A N/A 4.249±0.00 N/A 6.763±0.00
ENSMUST00000140428 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.963±0.00
ENSMUST00000147050 N/A N/A N/A N/A N/A N/A N/A N/A 0.089±0.00 N/A N/A N/A N/A 20.244±18.81

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00038J CIL_00038J_0002 CGP 5:66676098-67057159
CIL_00028N CIL_00028N_0003 CGP 5:66745835-67099301

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003779 IEA actin binding
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0008270 IEA zinc ion binding
GO:0031032 IEA actomyosin structure organization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000079060 limch1b LIM and calponin homology domains 1b protein_coding Danio_rerio
ENSG00000064042 LIMCH1 LIM and calponin homology domains 1 protein_coding Homo_sapiens

Loading