C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | LIM and calponin homology domains 1 | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000512632  |
LIMCH1-006 |
ENSG00000064042 |
9606 | + |
4:41360807-41699000  |
protein_coding |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_00038J | CIL_00038J_0001 | CGP | 4:41256413-41700044 |
| CIL_00028N | CIL_00028N_0002 | CGP | 4:41359607-41748970 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0003779 | IEA | actin binding |
| GO:0005515 | IEA | protein binding |
| GO:0008270 | IEA | zinc ion binding |
| GO:0031032 | IEA | actomyosin structure organization |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSMUST00000117601
|
Limch1-015 | protein_coding | Mus_musculus | 0 | 3435 |
|
ENSMUST00000119854
|
Limch1-014 | protein_coding | Mus_musculus | 0 | 2425 |
|
ENSMUST00000101164
|
Limch1-004 | protein_coding | Mus_musculus | 0 | 2425 |
|
ENSMUST00000038188
|
Limch1-001 | protein_coding | Mus_musculus | 0 | 1797 |
|
ENSMUST00000118242
|
Limch1-013 | protein_coding | Mus_musculus | 0 | 1195 |
|
ENSMUST00000140428
|
Limch1-002 | retained_intron | Mus_musculus | 0 | 1042 |
|
ENSMUST00000132991
|
Limch1-008 | protein_coding | Mus_musculus | 0 | 881 |
|
ENSMUST00000137394
|
Limch1-010 | retained_intron | Mus_musculus | 0 | 822 |
|
ENSMUST00000147050
|
Limch1-009 | processed_transcript | Mus_musculus | 0 | 739 |
|
ENSMUST00000127184
|
Limch1-007 | protein_coding | Mus_musculus | 0 | 568 |
|
ENSMUST00000122812
|
Limch1-006 | processed_transcript | Mus_musculus | 0 | 401 |
|
ENSMUST00000130228
|
Limch1-005 | nonsense_mediated_decay | Mus_musculus | 0 | 322 |
